Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 0.0e+00 2388.6 1268 100.0
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 9.6e-269 931.0 1302 48.8
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 5.5e-248 862.1 1291 46.6
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 1.3e-244 850.9 1388 43.8
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.9e-241 839.7 1286 45.8
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.0e-238 831.2 1277 47.4
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 3.1e-235 819.7 1360 44.6
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.9e-233 813.1 1325 44.4
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 3.2e-232 809.7 1314 44.4
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 4.1e-227 792.7 1296 44.1
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 5.3e-227 792.3 1316 43.2
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.5e-226 790.8 1295 44.5
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 2.5e-224 783.5 1355 41.9
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 9.4e-224 781.6 1307 43.7
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 4.7e-223 779.2 1293 44.4
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 2.1e-215 753.8 1266 42.9
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.0e-214 751.5 1315 42.8
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 4.0e-214 749.6 1302 42.2
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 1.5e-213 747.7 1314 42.8
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 1.5e-213 747.7 1315 43.0
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 2.6e-213 746.9 1315 42.9
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 1.7e-212 744.2 1318 44.1
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 3.8e-209 733.0 1304 42.3
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 3.6e-207 726.5 1281 41.8
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 8.0e-207 725.3 1308 41.8
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 1.8e-206 724.2 1310 42.3
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 4.0e-206 723.0 1302 42.5
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.5e-205 721.1 1255 43.5
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 9.8e-205 718.4 1255 43.4
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 1.7e-204 717.6 1274 42.2
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 9.1e-203 711.8 1302 41.2
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 2.3e-201 707.2 1302 40.5
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 2.3e-201 707.2 1376 39.7
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 1.9e-200 704.1 1296 43.1
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.7e-199 699.5 1311 40.5
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 6.1e-199 699.1 1293 40.1
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 7.5e-197 692.2 1276 40.9
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 6.3e-196 689.1 1306 40.9
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 4.1e-195 686.4 1308 41.4
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 4.5e-194 682.9 1284 41.0
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.7e-193 681.0 1265 40.9
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.8e-193 679.9 1271 40.8
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 3.3e-192 676.8 1301 39.5
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 9.5e-192 675.2 1278 40.1
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 9.5e-192 675.2 1306 41.1
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 3.6e-191 673.3 1297 39.4
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 3.6e-191 673.3 1301 40.7
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 1.5e-189 667.9 1362 39.1
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 1.5e-189 667.9 1305 39.9
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 7.5e-189 665.6 1299 39.3
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 1.2e-186 658.3 1302 40.1
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 3.5e-186 656.8 1304 39.9
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.5e-184 651.4 1357 38.8
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 9.5e-184 648.7 1348 38.3
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 1.6e-183 647.9 1332 37.9
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 5.2e-182 642.9 1255 39.8
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.0e-181 641.0 1335 38.9
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 9.2e-179 632.1 1304 38.8
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.0e-177 628.6 1287 39.5
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 1.9e-176 624.4 1305 37.8
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 7.3e-176 622.5 1310 39.0
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.4e-174 618.2 1309 39.2
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.8e-174 617.8 1296 38.3
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 3.2e-171 607.1 1334 39.1
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 2.7e-170 604.0 1265 38.9
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 3.5e-170 603.6 1272 37.8
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 3.0e-169 600.5 1255 38.6
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 3.5e-162 577.0 1322 37.0
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 4.6e-162 576.6 1297 37.6
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 8.7e-161 572.4 1297 37.4
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.1e-160 572.0 1179 38.8
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 3.3e-160 570.5 1341 35.6
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 3.6e-159 567.0 1285 37.6
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 6.2e-159 566.2 1308 37.4
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 8.1e-159 565.8 1315 38.2
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.1e-158 565.5 1177 39.8
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 5.8e-157 559.7 1058 39.6
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 9.9e-157 558.9 1274 37.0
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 1.3e-156 558.5 1273 38.3
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 1.0e-153 548.9 1257 37.3
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 2.5e-152 544.3 1271 37.1
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 4.8e-151 540.0 1272 36.7
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 6.2e-151 539.7 1265 36.8
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.1e-150 538.9 1415 35.2
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 3.0e-145 520.8 1356 36.1
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.8e-143 514.2 1298 35.7
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 5.8e-141 506.5 1245 36.1
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 2.2e-140 504.6 1129 38.1
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 8.4e-140 502.7 1207 35.8
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 6.9e-134 483.0 1253 36.2
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 4.5e-133 480.3 993 39.3
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 4.9e-132 476.9 672 47.2
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 8.4e-132 476.1 1307 35.7
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 7.9e-130 469.5 1387 34.8
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 1.8e-129 468.4 1295 34.4
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 4.3e-128 463.8 1420 34.3
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 2.2e-127 461.5 1272 32.9
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 8.2e-127 459.5 1274 34.1
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 3.6e-122 444.1 1295 33.1
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 7.9e-122 443.0 1267 33.1
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 1.4e-121 442.2 1294 32.8
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 3.9e-121 440.7 1041 36.6
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 2.5e-120 438.0 1283 33.6
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 7.4e-120 436.4 1266 33.6
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 1.7e-119 435.3 1267 33.5
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.2e-119 434.9 1316 32.9
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 2.8e-119 434.5 1284 33.4
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 3.7e-119 434.1 1274 32.7
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.2e-116 424.9 1309 31.9
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 4.2e-115 420.6 1297 33.2
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 3.5e-109 401.0 1283 32.9
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 5.9e-109 400.2 707 40.0
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.7e-105 386.7 1007 35.4
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 4.4e-104 384.0 1282 31.7
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 7.4e-104 383.3 1299 32.4
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 2.4e-102 378.3 1297 32.2
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 2.9e-100 371.3 1380 31.4
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 6.5e-100 370.2 1303 31.9
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 7.0e-94 350.1 1291 31.1
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 5.0e-92 344.0 1185 31.8
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.6e-90 337.8 321 61.7
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 5.7e-88 330.5 1274 29.5
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 4.1e-78 297.7 916 35.2
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 5.4e-78 297.4 1277 31.4
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 3.4e-72 278.1 1354 29.6
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 9.2e-70 270.0 1350 29.6
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 7.5e-64 250.4 1158 29.2
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 1.6e-61 242.7 190 70.5
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.1e-57 229.9 394 44.2
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 5.2e-57 227.6 189 68.3
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 9.2e-54 216.9 1329 27.5
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.3e-52 213.0 1309 28.1
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 6.6e-52 210.7 199 64.8
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 1.6e-50 206.1 726 32.0
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.1e-49 203.4 414 39.1
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 1.4e-41 176.4 1489 25.7
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 6.9e-41 174.1 215 51.2
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.0e-36 160.2 207 54.6
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 8.7e-36 157.1 488 34.2
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.6e-32 145.6 1374 25.8
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 9.9e-32 143.7 1331 24.6
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 8.4e-23 114.0 821 27.6
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.5e-22 112.5 389 32.1
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 7.1e-22 110.9 186 42.5
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 4.6e-21 108.2 210 37.6
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 7.4e-19 100.9 225 36.4
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 5.3e-17 94.7 1622 24.8
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 9.0e-17 94.0 69 72.5
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.2e-16 93.6 1356 25.3
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.7e-15 89.7 222 38.3
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 3.2e-14 85.5 142 43.7
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 4.6e-13 81.6 602 28.1
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 6.7e-12 77.8 138 39.1
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 6.3e-10 71.2 1463 23.9
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 8.5e-07 60.8 107 46.7
Lsat_1_v5_gn_0_32021 Lactuca sativa HOM05D000147 ORTHO05D013131 3.2e-06 58.9 75 50.7


User provided reference genes

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