Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g12260 Coffea canephora HOM05D001229 ORTHO05D001374 1.1e-33 146.0 69 100.0
CANSAT80G0731 Cannabis sativa HOM05D001229 ORTHO05D001374 1.3e-18 95.9 66 66.7
vmacro19406 Vaccinium macrocarpon HOM05D001229 ORTHO05D001374 4.6e-16 87.4 66 60.6
Cfa019163 Carpinus fangiana HOM05D001229 ORTHO05D001374 7.8e-16 86.7 64 67.2
CSS0003596 Camellia sinensis var. sinensis HOM05D001229 ORTHO05D001374 1.0e-15 86.3 66 62.1
Dinv20632 Davidia involucrata HOM05D001229 ORTHO05D001374 1.3e-15 85.9 64 64.1
GSVIVG01007712001 Vitis vinifera HOM05D001229 ORTHO05D001374 2.3e-15 85.1 66 60.6
Haze_07536 Corylus avellana HOM05D001229 ORTHO05D001374 3.0e-15 84.7 64 65.6
Potri.015G079300 Populus trichocarpa HOM05D001229 ORTHO05D001374 1.5e-14 82.4 66 56.1
Sed0001292 Sechium edule HOM05D001229 ORTHO05D001374 1.5e-14 82.4 61 65.6
ECA246G2671 Erigeron canadensis HOM05D001229 ORTHO05D001374 1.9e-14 82.0 64 59.4
CsaV3_1G001420 Cucumis sativus L. HOM05D001229 ORTHO05D001374 2.5e-14 81.6 61 63.9
QL10p010823 Quercus lobata HOM05D001229 ORTHO05D001374 3.3e-14 81.3 64 62.5
DCAR_026155 Daucus carota HOM05D001229 ORTHO05D001374 5.6e-14 80.5 64 60.9
Atru.chr9.2514 Acer truncatum HOM05D001229 ORTHO05D001374 7.3e-14 80.1 64 59.4
Ciclev10019821m.g Citrus clementina HOM05D001229 ORTHO05D001374 1.6e-13 79.0 66 59.1
Hma1.2p1_0046F.1_g026680 Hydrangea macrophylla HOM05D001229 ORTHO05D001374 1.6e-13 79.0 67 58.2
PGSC0003DMG401027084 Solanum tuberosum HOM05D001229 ORTHO05D001374 6.2e-13 77.0 62 62.9
Migut.O00119 Erythranthe guttata HOM05D001229 ORTHO05D001374 8.1e-13 76.6 67 56.7
Prupe.5G171300 Prunus persica HOM05D001229 ORTHO05D001374 8.1e-13 76.6 61 62.3
TAR622G0336 Trochodendron aralioides HOM05D001229 ORTHO05D001374 8.1e-13 76.6 61 59.0
MSTRG.23141 Avicennia marina HOM05D001229 ORTHO05D001374 1.1e-12 76.3 63 57.1
FvH4_5g05510 Fragaria vesca HOM05D001229 ORTHO05D001374 1.1e-12 76.3 64 57.8
FAN18G0788 Fragaria x ananassa HOM05D001229 ORTHO05D001374 1.1e-12 76.3 64 57.8
FAN18G3697 Fragaria x ananassa HOM05D001229 ORTHO05D001374 1.1e-12 76.3 64 57.8
MELO3C026288.2 Cucumis melo HOM05D001229 ORTHO05D001374 1.4e-12 75.9 61 60.7
Actinidia33082 Actinidia chinensis HOM05D001229 ORTHO05D001374 1.8e-12 75.5 62 56.5
MD14G1177400 Malus domestica HOM05D001229 ORTHO05D001374 1.8e-12 75.5 61 60.7
Lsat_1_v5_gn_5_15200 Lactuca sativa HOM05D001229 ORTHO05D001374 2.4e-12 75.1 62 56.5
Oeu046787.1 Olea europaea HOM05D001229 ORTHO05D001374 2.4e-12 75.1 61 62.3
Oeu046788.1 Olea europaea HOM05D001229 ORTHO05D001374 2.4e-12 75.1 61 62.3
CAN.G2085.2 Capsicum annuum HOM05D001229 ORTHO05D001374 3.1e-12 74.7 62 59.7
Sopen06g027850 Solanum pennellii HOM05D001229 ORTHO05D001374 3.1e-12 74.7 62 58.1
PGR083G0030 Punica granatum HOM05D001229 ORTHO05D001374 5.3e-12 73.9 64 57.8
Lj5C126T11 Lonicera japonica HOM05D001229 ORTHO05D001374 6.9e-12 73.6 61 62.3
Nitab4.5_0002643g0010 Nicotiana tabacum HOM05D001229 ORTHO05D001374 6.9e-12 73.6 64 59.4
Solyc06g071560.3 Solanum lycopersicum HOM05D001229 ORTHO05D001374 6.9e-12 73.6 62 56.5
Actinidia19333 Actinidia chinensis HOM05D001229 ORTHO05D001374 1.2e-11 72.8 64 56.2
Peaxi162Scf00689g00117 Petunia axillaris HOM05D001229 ORTHO05D001374 1.2e-11 72.8 64 62.5
RcHm_v2.0_Chr7g0193311 Rosa chinensis HOM05D001229 ORTHO05D001374 2.0e-11 72.0 64 56.2
Aqoxy3G01115 Aquilegia oxysepala HOM05D001229 ORTHO05D001374 3.4e-11 71.2 65 53.8
HanXRQChr05g0154611 Helianthus annuus HOM05D001229 ORTHO05D001374 5.8e-11 70.5 64 51.6
SalBow5G3105 Salvia bowleyana HOM05D001229 ORTHO05D001374 7.6e-11 70.1 62 54.8
FAN04G1215 Fragaria x ananassa HOM05D001229 ORTHO05D001374 1.3e-10 69.3 64 53.1
Eucgr.B00253 Eucalyptus grandis HOM05D001229 ORTHO05D001374 1.7e-10 68.9 64 54.7
FAN08G2882 Fragaria x ananassa HOM05D001229 ORTHO05D001374 2.2e-10 68.6 62 56.5
Aqoxy1G00649 Aquilegia oxysepala HOM05D001229 ORTHO05D001374 2.9e-10 68.2 64 53.1
Nn4g22698 Nelumbo nucifera HOM05D001229 ORTHO05D001374 3.8e-10 67.8 65 53.8
SGA_v2.0_scaffold90G27892 Striga asiatica HOM05D001229 ORTHO05D001374 8.4e-10 66.6 66 48.5
Thecc.03G015600 Theobroma cacao HOM05D001229 ORTHO05D001374 8.4e-10 66.6 61 55.7
FAN13G3075 Fragaria x ananassa HOM05D001229 ORTHO05D001374 1.9e-09 65.5 62 54.8
PSO017G2703 Papaver somniferum HOM05D001229 ORTHO05D001374 4.2e-09 64.3 62 48.4
PSO478G3541 Papaver somniferum HOM05D001229 ORTHO05D001374 4.2e-09 64.3 62 48.4
Gorai.008G294200 Gossypium raimondii HOM05D001229 ORTHO05D001374 1.2e-08 62.8 61 54.1
Gohir.A12G273100 Gossypium hirsutum HOM05D001229 ORTHO05D001374 1.6e-08 62.4 61 54.1
Glyma.04G185200 Glycine max HOM05D001229 ORTHO05D001374 2.1e-08 62.0 65 47.7
SEGI_13429 Sequoiadendron giganteum HOM05D001229 ORTHO05D001374 2.7e-08 61.6 57 50.9
Nitab4.5_0006198g0010 Nicotiana tabacum HOM05D003318 ORTHO05D004544 3.5e-08 61.2 54 59.3
Nn5g29361 Nelumbo nucifera HOM05D001229 ORTHO05D001374 4.6e-08 60.8 57 50.9
CDE05G2106 Ceratophyllum demersum HOM05D001229 ORTHO05D001374 6.0e-08 60.5 57 50.9
ATR1152G106 Amborella trichopoda HOM05D001229 ORTHO05D001374 7.9e-08 60.1 57 47.4
CDE05G3654 Ceratophyllum demersum HOM05D001229 ORTHO05D001374 7.9e-08 60.1 57 50.9
ECA234G3256 Erigeron canadensis HOM05D001229 ORTHO05D001374 7.9e-08 60.1 57 50.9
MBI16_g05478_MAGBIO Magnolia biondii HOM05D001229 ORTHO05D001374 7.9e-08 60.1 39 59.0
Os01g0600200 Oryza sativa ssp. japonica HOM05D001229 ORTHO05D001374 7.9e-08 60.1 57 54.4
HanXRQChr12g0360731 Helianthus annuus HOM05D001229 ORTHO05D001374 1.0e-07 59.7 57 50.9
Nitab4.5_0000003g0700 Nicotiana tabacum HOM05D001229 ORTHO05D001374 1.3e-07 59.3 39 61.5
Zm00001eb161320 Zea mays HOM05D001229 ORTHO05D001374 1.3e-07 59.3 62 51.6
Zm00001eb357700 Zea mays HOM05D001229 ORTHO05D001374 1.8e-07 58.9 63 50.8
Gohir.D12G273800 Gossypium hirsutum HOM05D001229 ORTHO05D001374 2.3e-07 58.5 61 52.5
Thhalv10011420m.g Eutrema salsugineum HOM05D001229 ORTHO05D001374 3.9e-07 57.8 57 49.1
TWI39G1047 Tripterygium wilfordii HOM05D001229 ORTHO05D001374 5.1e-07 57.4 65 47.7
AL1G59630 Arabidopsis lyrata HOM05D001229 ORTHO05D001374 6.7e-07 57.0 57 49.1
AT1G51690 Arabidopsis thaliana HOM05D001229 ORTHO05D001374 6.7e-07 57.0 57 49.1
HanXRQChr02g0031521 Helianthus annuus HOM05D001229 ORTHO05D001374 6.7e-07 57.0 57 49.1
Phvul.009G176600 Phaseolus vulgaris HOM05D001229 ORTHO05D001374 6.7e-07 57.0 65 46.2
Aa31LG4G3280 Aethionema arabicum HOM05D001229 ORTHO05D001374 8.7e-07 56.6 57 49.1
BcaB06g26216 Brassica carinata HOM05D001229 ORTHO05D001374 8.7e-07 56.6 61 47.5
ECA247G2134 Erigeron canadensis HOM05D001229 ORTHO05D001374 8.7e-07 56.6 58 50.0
Os02g0224200 Oryza sativa ssp. japonica HOM05D001229 ORTHO05D001374 8.7e-07 56.6 64 48.4
Potri.003G034300 Populus trichocarpa HOM05D001229 ORTHO05D001374 8.7e-07 56.6 57 47.4
TWI34G0565 Tripterygium wilfordii HOM05D001229 ORTHO05D001374 8.7e-07 56.6 57 47.4
TWI63G1248 Tripterygium wilfordii HOM05D001229 ORTHO05D001374 8.7e-07 56.6 57 47.4
Aqoxy5G01423 Aquilegia oxysepala HOM05D001229 ORTHO05D001374 1.1e-06 56.2 56 48.2
Lsat_1_v5_gn_1_36320 Lactuca sativa HOM05D001229 ORTHO05D001374 1.1e-06 56.2 62 46.8
ATR0789G096 Amborella trichopoda HOM05D001229 ORTHO05D001374 1.5e-06 55.8 57 50.9
THA.LOC104813945 Tarenaya hassleriana HOM05D001229 ORTHO05D001374 1.5e-06 55.8 57 49.1
Aa31LG7G2550 Aethionema arabicum HOM05D001229 ORTHO05D001374 1.9e-06 55.5 57 47.4
EL10Ac9g21105 Beta vulgaris HOM05D001229 ORTHO05D001374 1.9e-06 55.5 57 49.1
BcaB04g20597 Brassica carinata HOM05D001229 ORTHO05D001374 1.9e-06 55.5 61 45.9
Carub.0001s4056 Capsella rubella HOM05D001229 ORTHO05D001374 1.9e-06 55.5 56 48.2
CARHR041850 Cardamine hirsuta HOM05D001229 ORTHO05D001374 1.9e-06 55.5 57 47.4
THA.LOC104812210 Tarenaya hassleriana HOM05D001229 ORTHO05D001374 1.9e-06 55.5 57 47.4
TWI34G1104 Tripterygium wilfordii HOM05D001229 ORTHO05D001374 1.9e-06 55.5 57 45.6
TAR245G0005 Trochodendron aralioides HOM05D001229 ORTHO05D001374 1.9e-06 55.5 57 43.9
C03p90240 Brassica napus HOM05D001229 ORTHO05D001374 2.5e-06 55.1 52 46.2
Carub.0003s2125 Capsella rubella HOM05D001229 ORTHO05D001374 2.5e-06 55.1 57 47.4
Thhalv10007406m.g Eutrema salsugineum HOM05D001229 ORTHO05D001374 2.5e-06 55.1 57 47.4
Gohir.A05G133900 Gossypium hirsutum HOM05D001229 ORTHO05D001374 2.5e-06 55.1 57 49.1
Gorai.009G139900 Gossypium raimondii HOM05D001229 ORTHO05D001374 2.5e-06 55.1 57 49.1
MD08G1043800 Malus domestica HOM05D001229 ORTHO05D001374 2.5e-06 55.1 57 47.4
TWI63G0818 Tripterygium wilfordii HOM05D001229 ORTHO05D001374 2.5e-06 55.1 62 43.5
CARHR097170 Cardamine hirsuta HOM05D001229 ORTHO05D001374 3.3e-06 54.7 57 49.1
TWI32G1147 Tripterygium wilfordii HOM05D001229 ORTHO05D001374 3.3e-06 54.7 57 45.6
AUR62023910 Chenopodium quinoa HOM05D001229 ORTHO05D001374 4.3e-06 54.3 57 47.4
AUR62038336 Chenopodium quinoa HOM05D001229 ORTHO05D001374 4.3e-06 54.3 57 47.4
Ciclev10025398m.g Citrus clementina HOM05D001229 ORTHO05D001374 4.3e-06 54.3 57 45.6
Sp1g15810 Schrenkiella parvula HOM05D001229 ORTHO05D001374 4.3e-06 54.3 57 45.6
Sc10g0007730 Simmondsia chinensis HOM05D001229 ORTHO05D001374 4.3e-06 54.3 57 47.4
Zm00001eb205080 Zea mays HOM05D001229 ORTHO05D001374 4.3e-06 54.3 46 50.0
FAN27G0820 Fragaria x ananassa HOM05D001229 ORTHO05D001374 5.6e-06 53.9 57 45.6
Gohir.D05G135900 Gossypium hirsutum HOM05D001229 ORTHO05D001374 5.6e-06 53.9 60 46.7
Lsat_1_v5_gn_5_133880 Lactuca sativa HOM05D001229 ORTHO05D001374 5.6e-06 53.9 66 45.5
Nn6g32112 Nelumbo nucifera HOM05D001229 ORTHO05D001374 5.6e-06 53.9 57 43.9
Prupe.1G414000 Prunus persica HOM05D001229 ORTHO05D001374 5.6e-06 53.9 57 45.6
Sc12g0009810 Simmondsia chinensis HOM05D001229 ORTHO05D001374 5.6e-06 53.9 57 47.4
SGA_v2.0_scaffold71G23742 Striga asiatica HOM05D001229 ORTHO05D001374 5.6e-06 53.9 57 47.4
TPR.G24240 Trifolium pratense HOM05D001229 ORTHO05D001374 5.6e-06 53.9 57 45.6
vmacro18817 Vaccinium macrocarpon HOM05D001229 ORTHO05D001374 5.6e-06 53.9 57 47.4
Aqoxy7G01265 Aquilegia oxysepala HOM05D001229 ORTHO05D001374 7.4e-06 53.5 57 47.4
Cpa.g.sc131.38 Carica papaya HOM05D001229 ORTHO05D001374 7.4e-06 53.5 57 47.4
CDE04G3775 Ceratophyllum demersum HOM05D001229 ORTHO05D001374 7.4e-06 53.5 57 43.9
Dinv30394 Davidia involucrata HOM05D001229 ORTHO05D001374 7.4e-06 53.5 57 47.4
FvH4_2g32090 Fragaria vesca HOM05D001229 ORTHO05D001374 7.4e-06 53.5 57 45.6
FAN15G2318 Fragaria x ananassa HOM05D001229 ORTHO05D001374 7.4e-06 53.5 57 45.6
MBI04_g11705_MAGBIO Magnolia biondii HOM05D001229 ORTHO05D001374 7.4e-06 53.5 57 49.1
PSO063G4191 Papaver somniferum HOM05D001229 ORTHO05D001374 7.4e-06 53.5 66 45.5
PSO832G1874 Papaver somniferum HOM05D001229 ORTHO05D001374 7.4e-06 53.5 66 45.5
RcHm_v2.0_Chr6g0310651 Rosa chinensis HOM05D001229 ORTHO05D001374 7.4e-06 53.5 57 45.6
Hund00744 Selenicereus undatus HOM05D001229 ORTHO05D001374 7.4e-06 53.5 62 45.2
Actinidia32137 Actinidia chinensis HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 47.4
AL3G35300 Arabidopsis lyrata HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 45.6
CSS0006065 Camellia sinensis var. sinensis HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 47.4
COL.COLO4_30613 Corchorus olitorius HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 47.4
Gohir.A10G061900 Gossypium hirsutum HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 47.4
Gohir.D10G063500 Gossypium hirsutum HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 47.4
Gorai.011G067400 Gossypium raimondii HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 47.4
HanXRQChr10g0313131 Helianthus annuus HOM05D001229 ORTHO05D001374 9.6e-06 53.1 65 44.6
Lj5C48G0 Lonicera japonica HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 47.4
Lj9A517T57 Lonicera japonica HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 47.4
Manes.04G138000 Manihot esculenta HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 47.4
Manes.11G028200 Manihot esculenta HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 47.4
Medtr2g100370 Medicago truncatula HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 45.6
Medtr8g015880 Medicago truncatula HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 43.9
Psat4g193360 Pisum sativum HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 43.9
Sp1g38330 Schrenkiella parvula HOM05D001229 ORTHO05D001374 9.6e-06 53.1 56 46.4
TPR.G18319 Trifolium pratense HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 45.6
HPP92_004561 Vanilla planifolia HOM05D001229 ORTHO05D001374 9.6e-06 53.1 57 49.1


User provided reference genes

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