Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 1.9e-110 402.5 206 100.0
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 4.3e-86 321.6 198 83.8
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 7.4e-86 320.9 206 77.7
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 3.7e-85 318.5 207 81.2
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 1.4e-84 316.6 205 80.0
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 5.3e-84 314.7 206 80.1
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 4.5e-83 311.6 206 79.1
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 4.5e-83 311.6 206 77.2
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 7.6e-83 310.8 205 79.5
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 2.9e-82 308.9 206 79.1
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 4.9e-82 308.1 205 78.5
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 4.9e-82 308.1 208 76.9
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 6.5e-82 307.8 206 77.7
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 8.4e-82 307.4 190 84.7
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 1.4e-81 306.6 205 80.0
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 1.4e-81 306.6 206 77.7
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 1.9e-81 306.2 207 77.3
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 1.9e-81 306.2 187 85.0
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 3.2e-81 305.4 206 79.1
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 4.2e-81 305.1 199 77.9
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 7.1e-81 304.3 198 78.3
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 7.1e-81 304.3 198 78.3
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 9.3e-81 303.9 203 77.3
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 2.1e-80 302.8 206 75.7
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 2.1e-80 302.8 206 76.2
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 1.3e-79 300.1 203 75.9
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.3e-79 300.1 205 74.1
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.3e-79 300.1 205 74.1
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 1.8e-79 299.7 206 76.7
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 3.0e-79 298.9 191 79.1
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 3.0e-79 298.9 189 81.5
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 3.0e-79 298.9 199 77.4
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 3.9e-79 298.5 207 76.3
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 6.7e-79 297.7 199 76.4
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 8.7e-79 297.4 191 79.1
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 1.1e-78 297.0 187 80.7
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 1.9e-78 296.2 199 76.4
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 3.3e-78 295.4 191 79.6
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 3.3e-78 295.4 205 74.6
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 5.7e-78 294.7 199 75.9
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 5.7e-78 294.7 207 75.4
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 7.4e-78 294.3 206 75.2
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 7.4e-78 294.3 206 74.8
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 9.7e-78 293.9 206 73.8
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 9.7e-78 293.9 199 77.4
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 1.6e-77 293.1 199 76.9
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 1.6e-77 293.1 203 74.9
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 2.1e-77 292.7 201 73.1
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 1.1e-76 290.4 206 74.3
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 1.1e-76 290.4 206 75.2
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 1.8e-76 289.7 189 79.4
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 2.4e-76 289.3 209 73.2
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 3.1e-76 288.9 197 73.6
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 3.1e-76 288.9 202 74.3
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.1e-76 288.5 206 72.8
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.1e-76 288.5 206 72.8
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.1e-76 288.5 206 72.8
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 4.1e-76 288.5 198 75.8
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 9.0e-76 287.3 203 72.4
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.2e-75 287.0 206 72.8
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 1.2e-75 287.0 192 76.0
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 2.0e-75 286.2 206 72.3
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 4.5e-75 285.0 191 78.5
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 5.9e-75 284.6 189 77.8
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 5.9e-75 284.6 200 74.5
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 7.6e-75 284.3 206 71.8
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 1.0e-74 283.9 203 72.4
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 1.7e-74 283.1 198 70.7
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 2.2e-74 282.7 206 72.3
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 3.8e-74 282.0 199 72.9
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 5.0e-74 281.6 206 70.9
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 5.0e-74 281.6 207 71.5
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 6.5e-74 281.2 206 71.4
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 1.1e-73 280.4 206 70.4
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 1.1e-73 280.4 206 70.4
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 1.4e-73 280.0 199 72.4
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 1.9e-73 279.6 206 71.4
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 1.9e-73 279.6 206 71.4
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 1.9e-73 279.6 206 71.4
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 1.9e-73 279.6 206 71.4
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 3.2e-73 278.9 229 66.4
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 3.2e-73 278.9 205 68.3
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 9.3e-73 277.3 198 72.7
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 1.6e-72 276.6 206 68.4
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 2.7e-72 275.8 197 73.6
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 1.8e-71 273.1 183 78.1
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 1.8e-71 273.1 224 65.6
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 2.3e-71 272.7 198 71.7
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 3.0e-71 272.3 196 74.0
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 5.1e-71 271.6 206 67.5
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 5.1e-71 271.6 202 68.8
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 8.7e-71 270.8 205 67.3
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 1.1e-70 270.4 200 69.5
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 4.3e-70 268.5 168 78.6
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.3e-70 268.5 227 65.6
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 1.0e-66 257.3 317 50.2
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 1.9e-65 253.1 161 78.9
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 1.0e-63 247.3 239 58.6
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 4.4e-62 241.9 165 75.8
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 2.8e-61 239.2 202 65.3
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 9.4e-57 224.2 157 72.0
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 5.9e-51 204.9 132 78.0
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 1.3e-50 203.8 116 89.7
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.5e-49 200.3 135 75.6
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 9.4e-49 197.6 135 75.6
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 3.6e-48 195.7 116 85.3
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 4.0e-47 192.2 120 80.0
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 8.8e-47 191.0 106 88.7
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 9.7e-46 187.6 131 71.8
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 9.1e-44 181.0 153 62.7
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 3.2e-41 172.6 108 80.6
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 3.8e-34 149.1 148 57.4
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 4.2e-33 145.6 185 45.4
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 5.5e-33 145.2 195 49.2
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 6.8e-31 138.3 181 41.4
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 1.5e-25 120.6 93 65.6
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 3.6e-24 115.9 138 44.9
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 1.0e-23 114.4 210 37.6
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 2.6e-22 109.8 191 39.3
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 3.4e-22 109.4 135 48.1
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 1.4e-20 104.0 231 30.7
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 8.3e-13 78.2 190 29.5
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 3.6e-08 62.8 37 75.7
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 3.1e-07 59.7 38 68.4
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 5.2e-07 58.9 31 90.3
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 5.2e-07 58.9 71 40.8


User provided reference genes

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