Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 9.5e-74 280.0 136 100.0
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 1.1e-50 203.4 151 70.9
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 1.2e-36 156.8 126 62.7
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.6e-36 154.8 130 58.5
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 6.0e-36 154.5 130 57.7
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 1.5e-34 149.8 124 63.7
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 2.5e-34 149.1 129 58.9
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.5e-34 149.1 129 58.9
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 4.3e-34 148.3 130 59.2
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 9.6e-34 147.1 134 61.9
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 1.3e-33 146.7 141 57.4
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 1.3e-33 146.7 132 59.1
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 1.6e-33 146.4 138 60.9
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 1.1e-32 143.7 128 62.5
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 1.4e-32 143.3 130 63.8
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 4.0e-32 141.7 140 56.4
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 6.9e-32 141.0 133 60.2
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 6.9e-32 141.0 132 61.4
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 2.0e-31 139.4 126 58.7
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 2.6e-31 139.0 134 59.0
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 3.4e-31 138.7 124 62.1
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 3.4e-31 138.7 130 63.8
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 3.4e-31 138.7 133 58.6
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 4.5e-31 138.3 128 59.4
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 5.8e-31 137.9 142 56.3
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.0e-30 137.1 130 60.8
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 1.3e-30 136.7 136 54.4
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.7e-30 136.3 129 60.5
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.7e-30 136.3 129 60.5
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.7e-30 136.3 129 57.4
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.2e-30 136.0 124 60.5
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 2.2e-30 136.0 136 58.8
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 2.2e-30 136.0 135 57.8
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 2.9e-30 135.6 137 56.2
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 3.8e-30 135.2 139 54.7
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.8e-30 135.2 134 58.2
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 4.9e-30 134.8 133 57.9
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.9e-30 134.8 133 57.9
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 6.5e-30 134.4 143 50.3
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 8.4e-30 134.0 133 57.9
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 8.4e-30 134.0 130 61.5
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 1.1e-29 133.7 127 60.6
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.1e-29 133.7 135 55.6
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.9e-29 132.9 131 58.8
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.9e-29 132.9 127 58.3
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.5e-29 132.5 141 55.3
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 3.2e-29 132.1 136 57.4
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 5.5e-29 131.3 124 59.7
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 5.5e-29 131.3 138 55.8
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 5.5e-29 131.3 126 59.5
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 7.1e-29 131.0 136 57.4
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 1.2e-28 130.2 145 52.4
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.2e-28 130.2 130 56.9
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.6e-28 129.8 140 52.9
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 2.1e-28 129.4 133 54.1
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 3.5e-28 128.6 133 57.1
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 3.5e-28 128.6 132 56.1
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 7.9e-28 127.5 140 52.1
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 7.9e-28 127.5 135 53.3
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 7.9e-28 127.5 135 53.3
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.0e-27 127.1 133 57.1
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.3e-27 126.7 132 56.1
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 1.8e-27 126.3 139 54.7
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 5.1e-27 124.8 146 52.1
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.5e-26 123.2 129 55.8
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 2.5e-26 122.5 124 52.4
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 3.3e-26 122.1 138 52.2
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 5.7e-26 121.3 138 54.3
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 7.4e-26 120.9 145 49.0
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 4.8e-25 118.2 143 49.7
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 6.3e-25 117.9 146 51.4
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 8.2e-25 117.5 124 54.0
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.1e-24 117.1 138 52.2
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.4e-24 116.7 148 46.6
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 1.4e-24 116.7 124 54.0
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 1.8e-24 116.3 132 50.8
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.1e-24 115.5 146 49.3
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 4.1e-24 115.2 141 49.6
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 4.1e-24 115.2 121 55.4
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 6.9e-24 114.4 121 52.9
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 1.5e-23 113.2 133 49.6
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 1.5e-23 113.2 145 50.3
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 1.5e-23 113.2 144 49.3
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.6e-23 112.5 141 50.4
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 3.4e-23 112.1 151 49.0
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 7.6e-23 110.9 148 49.3
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 1.0e-22 110.5 141 48.2
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.7e-22 109.8 141 48.9
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.7e-22 109.8 150 47.3
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 2.9e-22 109.0 122 51.6
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.8e-22 108.6 143 48.3
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 3.8e-22 108.6 125 50.4
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 3.8e-22 108.6 139 46.8
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 3.8e-22 108.6 125 51.2
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 5.0e-22 108.2 147 47.6
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 5.0e-22 108.2 127 49.6
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 6.5e-22 107.8 145 48.3
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 8.5e-22 107.5 140 47.1
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 8.5e-22 107.5 137 47.4
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 1.1e-21 107.1 142 48.6
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.1e-21 107.1 144 46.5
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.1e-21 107.1 126 54.0
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.4e-21 106.7 124 50.8
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.4e-21 106.7 131 49.6
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 4.2e-21 105.1 147 45.6
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 7.2e-21 104.4 139 45.3
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.2e-20 103.6 142 45.8
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.6e-20 103.2 163 42.3
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.1e-20 102.8 171 41.5
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 7.9e-20 100.9 129 48.8
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 7.9e-20 100.9 130 46.9
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 7.9e-20 100.9 130 46.9
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 1.4e-19 100.1 120 50.8
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.8e-19 99.8 124 51.6
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 6.7e-19 97.8 129 49.6
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 8.8e-19 97.4 127 48.0
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 1.1e-18 97.1 165 40.0
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.1e-18 97.1 124 46.0
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.5e-18 96.7 144 45.1
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 3.3e-18 95.5 141 44.0
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 3.3e-18 95.5 124 44.4
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.3e-18 95.1 130 46.2
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 1.3e-17 93.6 187 38.5
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.2e-17 92.8 142 43.7
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 3.7e-17 92.0 128 44.5
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 3.7e-17 92.0 128 44.5
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 3.7e-17 92.0 189 36.5
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 6.3e-17 91.3 124 42.7
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 8.2e-17 90.9 125 47.2
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.4e-16 89.4 123 46.3
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 1.2e-15 87.0 146 41.8
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.5e-15 86.7 115 47.8
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 4.5e-15 85.1 148 38.5
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 5.9e-15 84.7 131 43.5
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 5.9e-15 84.7 131 43.5
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 1.7e-14 83.2 142 40.1
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 1.7e-14 83.2 147 40.1
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 2.2e-14 82.8 141 41.8
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.2e-14 82.8 131 41.2
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.8e-14 82.0 125 43.2
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 6.5e-14 81.3 130 41.5
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 1.4e-13 80.1 147 40.1
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.2e-13 78.6 122 40.2
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 5.5e-13 78.2 147 40.1
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 5.5e-13 78.2 140 40.0
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 5.5e-13 78.2 140 40.0
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 9.4e-13 77.4 138 41.3
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 1.6e-12 76.6 144 38.9
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.7e-12 75.1 122 38.5
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 7.9e-12 74.3 134 40.3
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.0e-11 73.9 136 39.0
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 6.7e-11 71.2 85 43.5
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.3e-09 67.0 81 46.9
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 2.2e-09 66.2 125 40.8
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 4.1e-08 62.0 37 70.3
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 5.9e-07 58.2 51 56.9
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.7e-06 56.6 31 83.9
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 5.0e-06 55.1 29 79.3


User provided reference genes

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