Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 8.9e-45 183.3 100 100.0
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 5.6e-39 164.1 100 81.0
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 1.5e-36 156.0 100 82.0
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 5.8e-36 154.1 100 80.0
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 9.9e-36 153.3 100 75.0
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 1.3e-35 152.9 100 82.0
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 1.3e-35 152.9 100 82.0
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 1.7e-35 152.5 100 77.0
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 1.7e-35 152.5 100 83.0
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 1.4e-34 149.4 100 80.0
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 3.5e-33 144.8 100 79.0
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 4.6e-33 144.4 93 76.3
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 4.6e-33 144.4 100 72.0
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 4.6e-33 144.4 100 78.0
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 4.6e-33 144.4 100 78.0
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 7.8e-33 143.7 100 77.0
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 1.3e-32 142.9 100 76.0
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 1.3e-32 142.9 100 78.0
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 3.0e-32 141.7 100 75.0
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 3.0e-32 141.7 100 74.0
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 1.1e-31 139.8 100 73.0
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 1.5e-31 139.4 100 73.0
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 1.9e-31 139.0 100 76.0
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 2.5e-31 138.7 100 72.0
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 1.6e-30 136.0 100 74.0
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 1.6e-30 136.0 100 65.0
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 2.8e-30 135.2 100 75.0
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 6.2e-30 134.0 100 73.0
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 6.2e-30 134.0 100 73.0
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 6.2e-30 134.0 100 75.0
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 8.1e-30 133.7 100 76.0
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 8.1e-30 133.7 100 76.0
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 1.1e-29 133.3 100 74.0
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 1.4e-29 132.9 100 73.0
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 1.8e-29 132.5 98 74.5
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 2.4e-29 132.1 100 72.0
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 4.0e-29 131.3 100 75.0
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 9.0e-29 130.2 100 74.0
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 9.0e-29 130.2 100 74.0
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 2.0e-28 129.0 100 69.0
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 2.6e-28 128.6 92 75.0
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 3.4e-28 128.3 100 73.0
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 9.9e-28 126.7 131 59.5
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 1.3e-27 126.3 100 67.0
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 1.3e-27 126.3 100 73.0
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 1.3e-27 126.3 100 73.0
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 1.7e-27 125.9 75 78.7
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 2.9e-27 125.2 100 72.0
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 3.8e-27 124.8 98 70.4
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 6.4e-27 124.0 100 69.0
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 3.2e-26 121.7 100 70.0
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 5.4e-26 120.9 100 69.0
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 7.1e-26 120.6 100 62.0
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 7.1e-26 120.6 100 62.0
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 9.3e-26 120.2 100 72.0
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 7.8e-25 117.1 100 66.0
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 1.3e-24 116.3 100 67.0
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 3.9e-24 114.8 100 65.0
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 1.9e-23 112.5 101 64.4
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 3.3e-23 111.7 102 62.7
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 3.3e-23 111.7 93 69.9
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 4.3e-23 111.3 100 65.0
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 5.6e-23 110.9 72 75.0
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 7.3e-23 110.5 69 76.8
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 7.3e-23 110.5 100 61.0
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 9.6e-23 110.2 102 62.7
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 9.6e-23 110.2 98 64.3
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 4.8e-22 107.8 100 61.0
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 6.2e-22 107.5 100 60.0
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 8.1e-22 107.1 102 60.8
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 8.1e-22 107.1 100 62.0
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 8.1e-22 107.1 100 65.0
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 8.1e-22 107.1 98 61.2
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 2.4e-21 105.5 87 60.9
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 2.4e-21 105.5 100 66.0
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 1.5e-20 102.8 102 60.8
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 1.5e-20 102.8 100 65.0
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 1.5e-20 102.8 100 65.0
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 9.9e-20 100.1 100 54.0
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 1.7e-19 99.4 102 57.8
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 1.7e-19 99.4 102 57.8
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 2.9e-19 98.6 100 65.0
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 3.8e-19 98.2 93 61.3
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 3.8e-19 98.2 93 61.3
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 3.8e-19 98.2 93 61.3
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 1.9e-18 95.9 100 59.0
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 3.2e-18 95.1 100 59.0
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 4.2e-18 94.7 100 52.0
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 9.3e-18 93.6 101 59.4
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 9.3e-18 93.6 100 57.0
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 3.5e-17 91.7 101 60.4
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 7.9e-17 90.5 100 52.0
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 1.8e-16 89.4 100 56.0
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 1.5e-15 86.3 53 79.2
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 2.1e-14 82.4 91 59.3
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 2.8e-14 82.0 48 77.1
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 3.7e-14 81.6 48 81.2
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 1.4e-13 79.7 61 77.0
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 3.1e-13 78.6 90 51.1
Nn3g16705 Nelumbo nucifera HOM05D006995 ORTHO05D008870 1.5e-12 76.3 61 75.4
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 1.0e-11 73.6 48 72.9
TAR629G2225 Trochodendron aralioides HOM05D000001 ORTHO05D414751 1.0e-11 73.6 53 83.0
BolC3t18603H Brassica oleracea HOM05D006995 ORTHO05D008870 2.9e-11 72.0 48 68.8
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 1.1e-10 70.1 93 52.7
DCAR_006239 Daucus carota HOM05D006995 ORTHO05D008870 1.4e-10 69.7 80 60.0
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 2.5e-10 68.9 82 57.3
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 2.5e-10 68.9 46 67.4
TPR.G22880 Trifolium pratense HOM05D006995 ORTHO05D008870 6.0e-09 64.3 52 71.2
AUR62008151 Chenopodium quinoa HOM05D006995 ORTHO05D008870 7.9e-09 63.9 57 56.1
Mapoly0052s0030 Marchantia polymorpha HOM05D006995 ORTHO05D008870 1.3e-08 63.2 86 41.9
MBI15_g24199_MAGBIO Magnolia biondii HOM05D006995 ORTHO05D008870 3.3e-07 58.5 51 74.5
CBR_g45542 Chara braunii HOM05D006995 ORTHO05D008870 5.7e-07 57.8 71 47.9


User provided reference genes

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