Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g11530 Coffea canephora HOM05D003210 ORTHO05D000001 5.7e-75 286.6 216 100.0
Dinv24763 Davidia involucrata HOM05D003210 ORTHO05D000001 1.5e-35 155.6 210 71.9
CSS0019582 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 7.6e-35 153.3 207 69.1
CSS0039883 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 1.7e-34 152.1 207 68.1
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 5.4e-33 147.1 206 62.1
Sed0013166 Sechium edule HOM05D003210 ORTHO05D000001 1.6e-32 145.6 205 65.4
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 3.5e-32 144.4 206 63.6
Peaxi162Scf00776g00227 Petunia axillaris HOM05D003210 ORTHO05D000001 4.6e-32 144.1 205 70.7
MSTRG.6643 Avicennia marina HOM05D003210 ORTHO05D000001 2.3e-31 141.7 211 62.6
MELO3C013188.2 Cucumis melo HOM05D003210 ORTHO05D000001 3.0e-31 141.4 206 62.1
Nitab4.5_0000441g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.0e-31 141.4 205 71.2
QL04p021900 Quercus lobata HOM05D003210 ORTHO05D000001 1.1e-30 139.4 210 68.1
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 1.5e-30 139.0 209 40.2
MELO3C024111.2 Cucumis melo HOM05D003210 ORTHO05D000001 1.6e-29 135.6 205 66.8
Atru.chr6.3361 Acer truncatum HOM05D003210 ORTHO05D000001 4.8e-29 134.0 210 63.3
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 8.1e-29 133.3 210 67.1
CiPaw.12G072400 Carya illinoinensis HOM05D003210 ORTHO05D000001 1.8e-28 132.1 207 66.7
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 1.8e-28 132.1 206 44.7
Ciclev10014182m.g Citrus clementina HOM05D003210 ORTHO05D000001 4.0e-28 131.0 208 60.1
CsaV3_7G023730 Cucumis sativus L. HOM05D003210 ORTHO05D000001 4.0e-28 131.0 205 65.9
Sopen07g024250 Solanum pennellii HOM05D003210 ORTHO05D000001 5.3e-28 130.6 205 68.3
Haze_07989 Corylus avellana HOM05D003210 ORTHO05D000001 1.5e-27 129.0 204 66.7
PGSC0003DMG400006128 Solanum tuberosum HOM05D003210 ORTHO05D000001 3.4e-27 127.9 205 67.3
Cfa012658 Carpinus fangiana HOM05D003210 ORTHO05D000001 1.3e-26 125.9 205 65.9
Solyc07g047820.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 2.2e-26 125.2 205 67.3
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 3.8e-26 124.4 209 47.8
PGR142G4479 Punica granatum HOM05D003210 ORTHO05D000001 4.9e-26 124.0 204 67.2
MD09G1122300 Malus domestica HOM05D003210 ORTHO05D000001 6.4e-26 123.6 208 66.8
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 6.4e-26 123.6 204 36.3
DCAR_012908 Daucus carota HOM05D003210 ORTHO05D000001 1.4e-25 122.5 212 61.8
DCAR_012925 Daucus carota HOM05D003210 ORTHO05D000001 1.4e-25 122.5 212 61.8
TAR629G0622 Trochodendron aralioides HOM05D003210 ORTHO05D000001 1.9e-25 122.1 204 67.6
SalBow7G0399 Salvia bowleyana HOM05D003210 ORTHO05D000001 5.5e-25 120.6 203 63.5
vmacro12101 Vaccinium macrocarpon HOM05D003210 ORTHO05D000001 2.7e-24 118.2 210 65.2
SGA_v2.0_scaffold181G39678 Striga asiatica HOM05D003210 ORTHO05D000001 1.0e-23 116.3 207 58.5
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 1.5e-22 112.5 209 34.9
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.5e-22 112.5 209 34.9
Dinv24770 Davidia involucrata HOM05D003210 ORTHO05D000001 7.4e-22 110.2 199 49.2
Migut.M00034 Erythranthe guttata HOM05D003210 ORTHO05D000001 1.1e-20 106.3 197 60.4
Oeu040467.2 Olea europaea HOM05D003210 ORTHO05D000001 3.1e-20 104.8 210 61.4
Nitab4.5_0011940g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 5.3e-20 104.0 85 58.8
Dinv33235 Davidia involucrata HOM05D003210 ORTHO05D000001 5.8e-19 100.5 210 62.4
MBI19_g25583_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 1.7e-18 99.0 210 60.0
SHI10143 Sapria himalayana HOM05D003210 ORTHO05D000001 2.2e-18 98.6 206 53.9
FAN02G2842 Fragaria x ananassa HOM05D003210 ORTHO05D000001 6.5e-18 97.1 208 62.5
Manes.12G061200 Manihot esculenta HOM05D003210 ORTHO05D000001 1.9e-17 95.5 210 61.9
CAN.G1397.6 Capsicum annuum HOM05D003210 ORTHO05D000001 1.3e-15 89.4 75 57.3
HanXRQChr13g0389381 Helianthus annuus HOM05D003210 ORTHO05D000001 5.1e-15 87.4 205 60.5
TWI18G1117 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 8.7e-15 86.7 202 61.9
Ah.15g091280 Amaranthus hybridus HOM05D003210 ORTHO05D000001 2.5e-14 85.1 209 56.5
RcHm_v2.0_Chr2g0156641 Rosa chinensis HOM05D003210 ORTHO05D000001 1.3e-13 82.8 53 69.8
FAN05G1838 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.8e-12 79.0 53 66.0
Nn1g03235 Nelumbo nucifera HOM05D003210 ORTHO05D000001 2.4e-12 78.6 215 57.7
FAN09G1124 Fragaria x ananassa HOM05D003210 ORTHO05D000001 6.9e-12 77.0 53 64.2
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 1.0e-10 73.2 180 37.2
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.7e-10 72.4 162 27.2
COL.COLO4_08492 Corchorus olitorius HOM05D003210 ORTHO05D000001 1.7e-10 72.4 85 50.6
Hma1.2p1_0133F.1_g061410 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 2.2e-10 72.0 53 64.2
Hma1.2p1_0133F.1_g061420 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 2.2e-10 72.0 53 64.2
Hma1.2p1_1825F.1_g304380 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 2.2e-10 72.0 53 64.2
HPP92_009567 Vanilla planifolia HOM05D003210 ORTHO05D000001 8.4e-10 70.1 85 40.0
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.9e-09 68.9 162 25.9
PSO541G3269 Papaver somniferum HOM05D003210 ORTHO05D000001 2.5e-09 68.6 53 62.3
PSO675G6229 Papaver somniferum HOM05D003210 ORTHO05D000001 3.2e-09 68.2 78 50.0
AUR62017491 Chenopodium quinoa HOM05D003210 ORTHO05D000001 7.2e-09 67.0 53 60.4
AUR62015034 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.6e-08 65.9 83 45.8
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 2.7e-08 65.1 185 23.8
GSVIVG01030055001 Vitis vinifera HOM05D003210 ORTHO05D000001 2.7e-08 65.1 50 64.0
Aqoxy4G02220 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 4.6e-08 64.3 75 48.0
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 1.8e-07 62.4 180 41.7
unitig_748.g8367 Utricularia gibba HOM05D003210 ORTHO05D000001 3.0e-07 61.6 53 54.7
Lsat_1_v5_gn_9_104601 Lactuca sativa HOM05D003210 ORTHO05D000001 3.9e-07 61.2 77 46.8
Nitab4.5_0002364g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.9e-07 61.2 180 45.0
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 5.1e-07 60.8 180 39.4
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 6.7e-07 60.5 174 21.8
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 8.7e-07 60.1 174 21.8
Eucgr.K00651 Eucalyptus grandis HOM05D003210 ORTHO05D000001 1.1e-06 59.7 53 50.9
Nitab4.5_0000574g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 1.5e-06 59.3 180 45.0
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 2.5e-06 58.5 180 41.1
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 3.3e-06 58.2 162 62.3
SEGI_31076 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 3.3e-06 58.2 202 54.0
CDE02G0711 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 4.3e-06 57.8 72 40.3
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 4.3e-06 57.8 190 39.5
ECA240G1833 Erigeron canadensis HOM05D003210 ORTHO05D000001 5.7e-06 57.4 51 49.0
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 5.7e-06 57.4 202 39.6
HanXRQChr03g0075201 Helianthus annuus HOM05D003210 ORTHO05D000001 7.4e-06 57.0 56 48.2
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 9.7e-06 56.6 177 39.5


User provided reference genes

Program Settings