Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 0.0e+00 1268.4 656 100.0
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 1.6e-174 617.1 665 54.9
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 2.5e-172 609.8 664 53.9
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 6.9e-170 601.7 655 55.6
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 7.6e-169 598.2 669 54.1
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 4.9e-168 595.5 672 53.6
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 3.0e-165 586.3 689 53.4
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 8.7e-165 584.7 687 53.0
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 5.3e-162 575.5 672 52.7
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 1.4e-159 567.4 676 51.2
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 4.3e-156 555.8 643 52.3
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 7.4e-156 555.1 660 50.9
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 8.2e-155 551.6 684 49.4
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 5.9e-153 545.4 675 50.2
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 7.7e-153 545.0 683 50.4
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 1.1e-151 541.2 676 51.0
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 1.6e-150 537.3 679 49.5
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.7e-150 536.6 672 50.1
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 2.3e-149 533.5 663 50.1
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 1.7e-147 527.3 669 49.0
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 3.7e-147 526.2 675 50.4
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 5.3e-146 522.3 673 49.5
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 2.6e-145 520.0 681 49.8
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.2e-144 516.9 671 49.2
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 8.5e-144 515.0 708 47.7
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 1.9e-143 513.8 671 49.9
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 1.9e-143 513.8 632 50.5
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 1.9e-143 513.8 565 54.9
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 3.6e-142 509.6 711 46.1
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 6.1e-142 508.8 701 48.4
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.0e-141 508.1 676 49.1
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 2.3e-141 506.9 643 47.9
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 1.5e-140 504.2 676 47.9
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 4.4e-140 502.7 660 48.9
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 3.7e-139 499.6 646 48.8
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 4.8e-139 499.2 567 52.2
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 5.3e-138 495.7 685 47.0
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 7.7e-137 491.9 678 46.6
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 1.3e-136 491.1 600 49.7
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 1.3e-136 491.1 673 46.2
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 1.6e-134 484.2 665 46.2
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 2.1e-134 483.8 578 51.4
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 2.7e-134 483.4 738 45.3
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 6.1e-134 482.3 662 47.1
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 5.7e-132 475.7 677 45.3
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 3.7e-131 473.0 607 48.3
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 5.9e-129 465.7 607 47.9
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 3.4e-124 449.9 639 46.0
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 3.7e-123 446.4 657 43.7
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 1.1e-114 418.3 630 44.1
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 2.4e-114 417.2 458 57.0
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 1.1e-111 408.3 458 53.3
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 2.3e-109 400.6 559 46.5
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 1.4e-106 391.3 451 52.1
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 9.2e-106 388.7 453 51.4
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 1.8e-101 374.4 613 41.8
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 1.3e-96 358.2 304 63.5
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 3.6e-86 323.6 274 62.4
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 1.5e-84 318.2 435 47.4
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 6.4e-83 312.8 274 59.9
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 4.6e-81 306.6 571 39.9
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 3.9e-80 303.5 484 44.8
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 3.6e-78 297.0 312 51.9
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 5.2e-77 293.1 389 50.4
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 4.2e-74 283.5 388 49.0
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 3.0e-72 277.3 592 37.7
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 4.4e-68 263.5 685 33.7
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 3.2e-66 257.3 653 35.1
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 9.6e-63 245.7 226 57.5
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 2.6e-52 211.1 218 52.3
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.7e-51 208.4 229 48.5
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 8.7e-48 196.1 216 55.6
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 7.4e-39 166.4 165 51.5
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 4.1e-37 160.6 316 35.1
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.9e-33 146.4 257 35.0
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 7.9e-33 146.4 507 31.0
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 1.8e-32 145.2 163 46.0
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 7.4e-31 139.8 137 59.1
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.2e-27 128.3 324 30.2
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.2e-27 128.3 324 30.2
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.9e-26 125.2 302 31.8
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 4.7e-25 120.6 242 35.5
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.7e-25 120.6 369 28.5
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.0e-24 119.4 404 28.5
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 7.0e-21 106.7 137 48.2
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 9.1e-21 106.3 461 28.0
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.2e-20 105.9 269 29.0
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 9.7e-15 86.3 267 28.1
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 1.2e-12 79.3 254 26.0
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 6.5e-11 73.6 268 25.4
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.5e-10 72.4 270 26.7
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 3.2e-10 71.2 246 25.6
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 7.2e-10 70.1 270 26.3
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 9.4e-10 69.7 273 26.4
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 1.6e-09 68.9 277 24.5
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 2.1e-09 68.6 260 24.6
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 2.7e-09 68.2 347 24.5
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 2.7e-09 68.2 277 23.8
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 3.6e-09 67.8 236 25.4
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 3.6e-09 67.8 243 25.5
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 4.7e-09 67.4 270 26.7
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 6.1e-09 67.0 256 24.2
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 6.1e-09 67.0 256 24.2
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 1.0e-08 66.2 127 35.4
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 1.0e-08 66.2 314 23.2
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 1.4e-08 65.9 381 22.0
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 1.4e-08 65.9 271 25.8
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 1.8e-08 65.5 256 25.0
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 1.8e-08 65.5 173 28.9
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 3.0e-08 64.7 243 25.5
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 3.0e-08 64.7 313 23.6
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 3.0e-08 64.7 327 24.8
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 6.8e-08 63.5 384 23.7
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 1.5e-07 62.4 251 23.5
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 1.5e-07 62.4 239 24.7
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 3.4e-07 61.2 271 23.2
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 3.4e-07 61.2 100 40.0
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 5.7e-07 60.5 356 22.5
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 7.5e-07 60.1 216 24.1
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 9.8e-07 59.7 189 26.5
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 9.8e-07 59.7 271 24.7
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 9.8e-07 59.7 256 23.4
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 9.8e-07 59.7 256 23.4
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 1.3e-06 59.3 270 24.8
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 1.3e-06 59.3 188 26.1
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 1.3e-06 59.3 271 23.6
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 1.7e-06 58.9 357 23.5
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 2.2e-06 58.5 215 25.6
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 2.8e-06 58.2 407 21.9
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 6.3e-06 57.0 345 22.6
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 8.3e-06 56.6 388 21.6


User provided reference genes

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