Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 2.7e-196 688.3 320 100.0
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 2.5e-157 558.9 320 77.5
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 7.3e-157 557.4 317 79.2
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 1.2e-156 556.6 318 78.0
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 1.6e-156 556.2 318 77.7
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 1.6e-156 556.2 318 79.6
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 2.8e-156 555.4 320 78.1
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 8.0e-156 553.9 318 76.4
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 2.3e-155 552.4 317 78.5
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 3.1e-155 552.0 318 77.0
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 3.1e-155 552.0 317 78.2
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 4.0e-155 551.6 317 77.9
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 4.0e-155 551.6 317 78.2
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 5.2e-155 551.2 316 78.8
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 6.8e-155 550.8 318 78.3
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 2.0e-154 549.3 318 75.8
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 2.0e-154 549.3 317 78.2
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 3.4e-154 548.5 317 77.9
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 4.4e-154 548.1 318 78.3
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 5.8e-154 547.7 318 77.4
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 5.8e-154 547.7 318 76.4
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 7.5e-154 547.4 317 76.3
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.3e-153 546.6 317 77.6
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 1.7e-153 546.2 318 75.8
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 8.3e-153 543.9 318 75.8
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 8.3e-153 543.9 319 77.7
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.4e-152 543.1 319 78.1
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 1.9e-152 542.7 318 76.1
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 1.9e-152 542.7 318 75.8
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 2.4e-152 542.3 318 76.4
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 4.1e-152 541.6 318 77.4
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 5.4e-152 541.2 320 76.2
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.2e-151 540.0 318 76.1
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 3.5e-151 538.5 318 76.1
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 1.0e-150 537.0 319 75.2
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.0e-150 537.0 318 74.8
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 1.0e-150 537.0 318 74.5
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 1.3e-150 536.6 318 74.5
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.3e-150 536.6 318 74.8
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.3e-150 536.6 318 74.5
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 3.0e-150 535.4 311 76.2
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 6.6e-150 534.3 318 75.2
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 8.6e-150 533.9 318 74.2
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 1.1e-149 533.5 318 73.0
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.9e-149 532.7 317 75.4
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 5.6e-149 531.2 319 75.9
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 1.6e-148 529.6 318 73.6
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.6e-148 529.6 311 74.9
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 2.8e-148 528.9 318 72.6
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 4.7e-148 528.1 320 74.7
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 6.2e-148 527.7 319 74.9
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 8.1e-148 527.3 318 74.5
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 1.4e-147 526.6 319 71.8
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 1.8e-147 526.2 318 73.9
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 3.1e-147 525.4 313 74.1
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 5.2e-147 524.6 319 73.0
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 6.8e-147 524.2 319 71.5
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 8.9e-147 523.9 320 74.1
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 1.2e-146 523.5 318 74.5
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 1.5e-146 523.1 318 73.0
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 3.4e-146 521.9 319 72.7
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 4.4e-146 521.5 317 73.2
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 5.8e-146 521.2 318 73.9
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 9.8e-146 520.4 314 74.5
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 1.3e-145 520.0 318 71.7
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 2.9e-145 518.8 319 72.7
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 3.7e-145 518.5 319 72.4
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 4.9e-145 518.1 317 73.8
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 4.9e-145 518.1 320 72.5
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 6.4e-145 517.7 318 74.5
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 6.4e-145 517.7 319 72.7
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 8.3e-145 517.3 321 72.6
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.1e-144 516.9 313 72.5
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.1e-144 516.9 321 71.3
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 1.4e-144 516.5 319 71.2
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 2.4e-144 515.8 319 72.7
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 2.4e-144 515.8 315 73.3
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 5.4e-144 514.6 309 73.8
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 7.1e-144 514.2 318 73.3
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 7.1e-144 514.2 314 73.6
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 9.2e-144 513.8 318 72.0
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 1.6e-143 513.1 319 70.5
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.6e-143 513.1 317 71.9
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 2.1e-143 512.7 309 72.8
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 2.1e-143 512.7 312 74.0
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.1e-143 512.7 295 76.3
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 3.5e-143 511.9 319 72.1
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 4.6e-143 511.5 318 71.4
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 4.6e-143 511.5 309 74.4
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.0e-142 510.4 318 72.6
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 2.3e-142 509.2 313 71.2
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 1.9e-141 506.1 319 71.5
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 1.9e-141 506.1 320 72.5
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 2.5e-141 505.8 318 72.6
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.3e-141 505.0 317 71.9
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 5.6e-141 504.6 317 71.9
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 9.5e-141 503.8 318 70.4
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.4e-139 500.0 308 71.8
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 1.8e-139 499.6 315 71.7
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 6.8e-139 497.7 313 70.3
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 4.4e-138 495.0 318 68.6
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 1.3e-137 493.4 318 69.2
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.1e-136 490.3 315 68.9
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 1.4e-136 490.0 315 69.5
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 5.4e-136 488.0 288 77.1
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 1.6e-135 486.5 315 69.2
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 2.7e-135 485.7 315 68.9
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 4.6e-135 485.0 318 69.8
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.7e-134 483.0 288 76.0
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 3.9e-134 481.9 316 70.9
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.5e-133 479.9 305 68.2
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 4.3e-133 478.4 306 69.9
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 4.3e-133 478.4 315 68.3
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 9.6e-133 477.2 318 65.7
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 1.2e-132 476.9 315 67.6
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 1.6e-132 476.5 315 67.9
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 1.6e-132 476.5 304 68.8
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 6.2e-132 474.6 306 69.9
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 1.1e-131 473.8 306 69.6
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 1.1e-131 473.8 306 69.6
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 1.1e-131 473.8 318 65.7
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 6.9e-131 471.1 288 72.6
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 4.9e-129 464.9 318 66.4
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 3.9e-126 455.3 293 71.0
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 1.1e-125 453.8 317 66.6
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 2.1e-124 449.5 306 66.7
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.5e-122 443.4 311 64.6
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 4.9e-121 438.3 272 71.3
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 1.9e-120 436.4 318 60.7
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.8e-118 429.9 306 62.4
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 1.8e-118 429.9 316 63.0
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 4.0e-115 418.7 312 62.2
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.9e-112 409.8 302 64.9
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.2e-112 409.1 312 58.7
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 4.2e-112 408.7 321 60.4
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 4.2e-112 408.7 321 60.4
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 1.1e-107 394.0 318 56.3
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 3.1e-107 392.5 216 80.6
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 1.6e-103 380.2 305 58.0
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 1.0e-102 377.5 221 75.1
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 1.5e-98 363.6 307 55.7
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 1.4e-91 340.5 314 51.9
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 1.1e-85 320.9 269 58.7
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 5.3e-75 285.4 304 49.3
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 8.5e-73 278.1 181 71.3
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.8e-67 260.4 260 51.9
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.4e-51 206.8 126 71.4
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 5.9e-50 202.2 134 70.1
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 8.9e-46 188.3 117 72.6
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 4.6e-42 176.0 318 34.0
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 1.2e-37 161.4 310 33.2
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 2.6e-29 133.7 243 34.2
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 1.7e-28 131.0 351 27.6
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 8.3e-28 128.6 95 61.1
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 8.7e-17 92.0 58 72.4
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 3.6e-15 86.7 74 60.8


User provided reference genes

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