Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g10990 Coffea canephora HOM05D007768 ORTHO05D009831 1.5e-157 560.1 420 100.0
Cc04_g11030 Coffea canephora HOM05D007768 ORTHO05D009831 8.4e-153 544.3 420 97.9
Sc07g0009860 Simmondsia chinensis HOM05D007768 ORTHO05D009831 5.2e-62 242.7 393 63.1
Sabra17G0017200 Salix brachista HOM05D007768 ORTHO05D009831 1.1e-59 235.0 410 60.0
CiPaw.09G024100 Carya illinoinensis HOM05D007768 ORTHO05D009831 1.9e-59 234.2 408 52.0
THA.LOC104803778 Tarenaya hassleriana HOM05D007768 ORTHO05D009831 5.4e-59 232.6 407 59.2
Carub.0005s2624 Capsella rubella HOM05D007768 ORTHO05D009831 7.0e-59 232.3 385 60.0
AL5G41420 Arabidopsis lyrata HOM05D007768 ORTHO05D009831 9.2e-59 231.9 391 56.8
AT3G59510 Arabidopsis thaliana HOM05D007768 ORTHO05D009831 1.2e-58 231.5 406 56.4
Nitab4.5_0011755g0020 Nicotiana tabacum HOM05D007768 ORTHO05D009831 1.2e-58 231.5 369 66.7
TWI15G0176 Tripterygium wilfordii HOM05D007768 ORTHO05D009831 2.0e-58 230.7 396 62.1
Sp5g03650 Schrenkiella parvula HOM05D007768 ORTHO05D009831 2.7e-58 230.3 406 56.7
CSS0032062 Camellia sinensis var. sinensis HOM05D007768 ORTHO05D009831 4.6e-58 229.6 418 55.7
BcaC08g44993 Brassica carinata HOM05D007768 ORTHO05D009831 1.7e-57 227.6 406 58.6
A07p24690 Brassica napus HOM05D007768 ORTHO05D009831 1.7e-57 227.6 406 58.6
C06p26230 Brassica napus HOM05D007768 ORTHO05D009831 1.7e-57 227.6 406 58.9
BolC6t37786H Brassica oleracea HOM05D007768 ORTHO05D009831 1.7e-57 227.6 406 58.9
BraA07t30114Z Brassica rapa HOM05D007768 ORTHO05D009831 1.7e-57 227.6 406 58.6
Psat5g289560 Pisum sativum HOM05D007768 ORTHO05D009831 2.5e-56 223.8 405 61.5
BcaB02g07459 Brassica carinata HOM05D007768 ORTHO05D009831 5.6e-56 222.6 406 58.1
CARHR169890 Cardamine hirsuta HOM05D007768 ORTHO05D009831 5.6e-56 222.6 397 61.2
THA.LOC104824141 Tarenaya hassleriana HOM05D007768 ORTHO05D009831 7.3e-56 222.2 384 63.3
Thhalv10006500m.g Eutrema salsugineum HOM05D007768 ORTHO05D009831 1.2e-55 221.5 407 57.2
Duzib212G0147 Durio zibethinus HOM05D007768 ORTHO05D009831 2.3e-54 217.2 410 60.7
Sabra02G0142500 Salix brachista HOM05D007768 ORTHO05D009831 3.1e-54 216.9 411 56.9
CiPaw.02G053300 Carya illinoinensis HOM05D007768 ORTHO05D009831 4.0e-54 216.5 404 59.9
C04p33400 Brassica napus HOM05D007768 ORTHO05D009831 8.9e-54 215.3 386 65.0
BcaB02g08219 Brassica carinata HOM05D007768 ORTHO05D009831 1.2e-53 214.9 387 65.4
BcaC02g10057 Brassica carinata HOM05D007768 ORTHO05D009831 1.5e-53 214.5 386 65.3
COL.COLO4_12975 Corchorus olitorius HOM05D007768 ORTHO05D009831 1.5e-53 214.5 410 61.2
A04p02150 Brassica napus HOM05D007768 ORTHO05D009831 5.8e-53 212.6 388 65.2
BolC4t24901H Brassica oleracea HOM05D007768 ORTHO05D009831 1.3e-52 211.5 386 64.8
BraA04t15942Z Brassica rapa HOM05D007768 ORTHO05D009831 4.9e-52 209.5 387 64.3
QL10p050487 Quercus lobata HOM05D007768 ORTHO05D009831 4.1e-51 206.5 392 61.5
TPR.G18860 Trifolium pratense HOM05D007768 ORTHO05D009831 4.1e-51 206.5 405 61.5
Ciclev10020393m.g Citrus clementina HOM05D007768 ORTHO05D009831 2.1e-50 204.1 403 61.3
Lju337C6T2 Lonicera japonica HOM05D007768 ORTHO05D009831 2.7e-50 203.8 408 60.0
Sopen05g029110 Solanum pennellii HOM05D007768 ORTHO05D009831 6.0e-50 202.6 400 61.0
EL10Ac3g05983 Beta vulgaris HOM05D007768 ORTHO05D009831 1.0e-49 201.8 397 58.2
Ah.13g072810 Amaranthus hybridus HOM05D007768 ORTHO05D009831 3.9e-49 199.9 397 56.4
CiPaw.10G021200 Carya illinoinensis HOM05D007768 ORTHO05D009831 1.5e-48 198.0 404 55.4
Peaxi162Scf01052g00315 Petunia axillaris HOM05D007768 ORTHO05D009831 2.5e-48 197.2 390 34.4
Medtr2g099020 Medicago truncatula HOM05D007768 ORTHO05D009831 3.3e-48 196.8 401 62.1
CSS0025913 Camellia sinensis var. sinensis HOM05D007768 ORTHO05D009831 9.5e-48 195.3 419 53.5
FAN17G2755 Fragaria x ananassa HOM05D007768 ORTHO05D009831 9.5e-48 195.3 397 57.2
FvH4_4g10920 Fragaria vesca HOM05D007768 ORTHO05D009831 4.7e-47 193.0 399 57.4
FAN12G0864 Fragaria x ananassa HOM05D007768 ORTHO05D009831 4.7e-47 193.0 399 57.4
ATR0743G119 Amborella trichopoda HOM05D007768 ORTHO05D009831 6.2e-47 192.6 384 53.1
FAN07G2880 Fragaria x ananassa HOM05D007768 ORTHO05D009831 3.1e-46 190.3 397 56.7
Lalb_Chr24g0396811 Lupinus albus HOM05D007768 ORTHO05D009831 2.6e-45 187.2 409 56.7
Nitab4.5_0006622g0010 Nicotiana tabacum HOM05D007768 ORTHO05D009831 3.4e-45 186.8 383 60.8
AUR62023860 Chenopodium quinoa HOM05D007768 ORTHO05D009831 5.8e-45 186.0 413 55.9
Atru.chr4.1241 Acer truncatum HOM05D007768 ORTHO05D009831 7.5e-45 185.7 402 45.0
Hma1.2p1_2011F.1_g311060 Hydrangea macrophylla HOM05D007768 ORTHO05D009831 2.2e-44 184.1 400 58.5
PGSC0003DMG400007033 Solanum tuberosum HOM05D007768 ORTHO05D009831 3.7e-44 183.3 400 59.2
Hma1.2p1_0886F.1_g232680 Hydrangea macrophylla HOM05D007768 ORTHO05D009831 4.9e-44 183.0 400 58.5
Gorai.011G141400 Gossypium raimondii HOM05D007768 ORTHO05D009831 1.2e-42 178.3 357 58.5
Gohir.A10G138600 Gossypium hirsutum HOM05D007768 ORTHO05D009831 2.7e-42 177.2 357 58.3
CAN.G112.12 Capsicum annuum HOM05D007768 ORTHO05D009831 7.8e-42 175.6 383 60.6
Gohir.D10G128200 Gossypium hirsutum HOM05D007768 ORTHO05D009831 7.8e-42 175.6 357 58.3
RcHm_v2.0_Chr4g0406451 Rosa chinensis HOM05D007768 ORTHO05D009831 1.7e-41 174.5 395 55.4
Rhsim09G0024900 Rhododendron simsii HOM05D007768 ORTHO05D009831 2.3e-41 174.1 408 52.5
Solyc05g050700.1 Solanum lycopersicum HOM05D007768 ORTHO05D009831 2.3e-41 174.1 400 58.2
Ah.07g202210 Amaranthus hybridus HOM05D007768 ORTHO05D009831 3.9e-41 173.3 393 55.7
Lalb_Chr14g0372491 Lupinus albus HOM05D007768 ORTHO05D009831 9.5e-40 168.7 409 57.7
Potri.017G028600 Populus trichocarpa HOM05D007768 ORTHO05D009831 1.6e-39 167.9 411 55.2
THA.LOC104802311 Tarenaya hassleriana HOM05D007768 ORTHO05D009831 6.2e-39 166.0 408 56.1
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 6.2e-39 166.0 391 59.1
Rhsim02G0081500 Rhododendron simsii HOM05D000578 ORTHO05D000422 1.4e-38 164.9 403 57.3
Haze_01481 Corylus avellana HOM05D007768 ORTHO05D009831 1.8e-38 164.5 391 53.7
Potri.017G028400 Populus trichocarpa HOM05D007768 ORTHO05D009831 6.8e-38 162.5 411 54.5
Gorai.006G229200 Gossypium raimondii HOM05D007768 ORTHO05D009831 2.0e-37 161.0 373 56.6
Aa31LG10G13830 Aethionema arabicum HOM05D007768 ORTHO05D009831 5.8e-37 159.5 332 58.4
DCAR_016491 Daucus carota HOM05D007768 ORTHO05D009831 2.2e-36 157.5 394 53.0
Duzib175G0003 Durio zibethinus HOM05D007768 ORTHO05D009831 2.2e-36 157.5 410 42.0
Gohir.D09G205201 Gossypium hirsutum HOM05D007768 ORTHO05D009831 8.4e-36 155.6 395 53.9
Gohir.A09G211750 Gossypium hirsutum HOM05D007768 ORTHO05D009831 1.6e-34 151.4 391 53.7
Cfa015181 Carpinus fangiana HOM05D007768 ORTHO05D009831 4.3e-32 143.3 401 50.6
AUR62002327 Chenopodium quinoa HOM05D007768 ORTHO05D009831 2.4e-30 137.5 345 58.6
Thecc.04G176800 Theobroma cacao HOM05D007768 ORTHO05D009831 9.9e-29 132.1 147 47.6
Duzib151G0147 Durio zibethinus HOM05D007768 ORTHO05D009831 1.9e-27 127.9 145 46.9
Sc25g0002590 Simmondsia chinensis HOM05D007768 ORTHO05D009831 2.4e-27 127.5 406 50.7
Dinv22750 Davidia involucrata HOM05D007768 ORTHO05D009831 3.5e-26 123.6 115 53.9
CiPaw.01G098100 Carya illinoinensis HOM05D007768 ORTHO05D009831 2.4e-22 110.9 115 48.7
SEGI_19656 Sequoiadendron giganteum HOM05D004495 ORTHO05D005361 2.6e-21 107.5 386 50.0
Glyma.15G029600 Glycine max HOM05D007768 ORTHO05D009831 2.2e-20 104.4 91 51.6
SEGI_39952 Sequoiadendron giganteum HOM05D004495 ORTHO05D005361 4.2e-19 100.1 409 45.5
Potri.017G028325 Populus trichocarpa HOM05D007768 ORTHO05D009831 3.0e-17 94.0 115 45.2
Phvul.007G038700 Phaseolus vulgaris HOM05D007150 ORTHO05D008994 2.5e-16 90.9 417 40.8
MBI16_g31755_MAGBIO Magnolia biondii HOM05D007150 ORTHO05D008994 3.1e-14 84.0 141 36.9
SMO137G0251 Selaginella moellendorffii HOM05D004495 ORTHO05D005361 4.0e-14 83.6 116 42.2
CAN.G1231.13 Capsicum annuum HOM05D007150 ORTHO05D008994 6.9e-14 82.8 151 33.8
HanXRQChr10g0301551 Helianthus annuus HOM05D007150 ORTHO05D008994 1.5e-13 81.6 393 36.6
Nitab4.5_0002815g0080 Nicotiana tabacum HOM05D007150 ORTHO05D008994 1.5e-13 81.6 151 33.8
ATR0724G003 Amborella trichopoda HOM05D007150 ORTHO05D008994 2.0e-13 81.3 393 44.3
HanXRQChr16g0513181 Helianthus annuus HOM05D007150 ORTHO05D008994 9.9e-13 79.0 386 33.2
Duzib151G0914 Durio zibethinus HOM05D007768 ORTHO05D009831 1.3e-12 78.6 107 43.0
Lj5g0008538 Lotus japonicus HOM05D007150 ORTHO05D008994 1.7e-12 78.2 144 31.9
MSTRG.16718 Avicennia marina HOM05D007150 ORTHO05D008994 2.9e-12 77.4 408 40.0
SMO351G0055 Selaginella moellendorffii HOM05D004495 ORTHO05D005361 2.9e-12 77.4 406 42.4
CSS0012154 Camellia sinensis var. sinensis HOM05D007768 ORTHO05D009831 3.8e-12 77.0 142 35.2
Ca_11085_v3 Cicer arietinum L. HOM05D007150 ORTHO05D008994 8.4e-12 75.9 144 33.3
Nn1g04720 Nelumbo nucifera HOM05D007150 ORTHO05D008994 8.4e-12 75.9 152 33.6
Actinidia11296 Actinidia chinensis HOM05D007768 ORTHO05D009831 1.2e-10 72.0 217 26.7
BolC9t57489H Brassica oleracea HOM05D004495 ORTHO05D005361 1.2e-10 72.0 155 33.5
Cc02_g19160 Coffea canephora HOM05D007150 ORTHO05D008994 1.2e-10 72.0 150 31.3
SGA_v2.0_scaffold32G13043 Striga asiatica HOM05D007150 ORTHO05D008994 1.2e-10 72.0 399 37.1
Cfa015066 Carpinus fangiana HOM05D007768 ORTHO05D009831 2.7e-10 70.9 49 63.3
C09p46250 Brassica napus HOM05D004495 ORTHO05D005361 6.0e-10 69.7 155 32.9
SMO196G0122 Selaginella moellendorffii HOM05D004495 ORTHO05D005361 6.0e-10 69.7 424 48.3
Glyma.20G127300 Glycine max HOM05D007150 ORTHO05D008994 7.9e-10 69.3 409 40.3
Medtr1g107500 Medicago truncatula HOM05D007150 ORTHO05D008994 7.9e-10 69.3 412 41.3
Migut.B00379 Erythranthe guttata HOM05D007150 ORTHO05D008994 1.0e-09 68.9 411 37.5
Glyma.10G263200 Glycine max HOM05D007150 ORTHO05D008994 1.0e-09 68.9 408 40.0
VMungo0720G0738 Vigna mungo HOM05D007150 ORTHO05D008994 1.0e-09 68.9 410 41.7
Duzib052G1025 Durio zibethinus HOM05D007150 ORTHO05D008994 2.3e-09 67.8 153 31.4
Sc08g0001480 Simmondsia chinensis HOM05D007150 ORTHO05D008994 2.3e-09 67.8 134 31.3
TPR.G27772 Trifolium pratense HOM05D007150 ORTHO05D008994 5.1e-09 66.6 127 34.6
Aqoxy5G01157 Aquilegia oxysepala HOM05D007150 ORTHO05D008994 6.7e-09 66.2 143 30.1
ECA232G3045 Erigeron canadensis HOM05D004495 ORTHO05D005361 1.5e-08 65.1 408 40.2
BcaB08g35911 Brassica carinata HOM05D004495 ORTHO05D005361 1.9e-08 64.7 146 32.9
A10p12750 Brassica napus HOM05D004495 ORTHO05D005361 3.3e-08 63.9 146 32.9
CSS0037176 Camellia sinensis var. sinensis HOM05D007150 ORTHO05D008994 3.3e-08 63.9 412 41.7
Medtr5g021290 Medicago truncatula HOM05D004495 ORTHO05D005361 3.3e-08 63.9 156 30.1
AL5G14770 Arabidopsis lyrata HOM05D004495 ORTHO05D005361 4.3e-08 63.5 140 34.3
BcaB05g22215 Brassica carinata HOM05D004495 ORTHO05D005361 4.3e-08 63.5 150 34.0
C02p16030 Brassica napus HOM05D004495 ORTHO05D005361 4.3e-08 63.5 150 34.0
Nitab4.5_0005392g0010 Nicotiana tabacum HOM05D007150 ORTHO05D008994 4.3e-08 63.5 151 29.1
CiPaw.05G010400 Carya illinoinensis HOM05D007150 ORTHO05D008994 5.6e-08 63.2 150 28.7
Rhsim11G0160700 Rhododendron simsii HOM05D007150 ORTHO05D008994 5.6e-08 63.2 151 29.1
DCAR_021488 Daucus carota HOM05D004495 ORTHO05D005361 7.4e-08 62.8 414 37.7
HanXRQChr11g0325661 Helianthus annuus HOM05D004495 ORTHO05D005361 7.4e-08 62.8 395 37.2
BolC2t07713H Brassica oleracea HOM05D004495 ORTHO05D005361 9.6e-08 62.4 150 33.3
THA.LOC104819189 Tarenaya hassleriana HOM05D004495 ORTHO05D005361 9.6e-08 62.4 127 37.8
Aa31LG1G14830 Aethionema arabicum HOM05D004495 ORTHO05D005361 1.3e-07 62.0 135 34.1
TPR.G2403 Trifolium pratense HOM05D004495 ORTHO05D005361 1.3e-07 62.0 156 29.5
AagrBONN_evm.TU.Sc2ySwM_368.1906 Anthoceros agrestis HOM05D004495 ORTHO05D005361 1.6e-07 61.6 84 40.5
BcaB05g22213 Brassica carinata HOM05D004495 ORTHO05D005361 1.6e-07 61.6 147 34.7
BraA10t43367Z Brassica rapa HOM05D004495 ORTHO05D005361 1.6e-07 61.6 413 40.4
Thhalv10013640m.g Eutrema salsugineum HOM05D004495 ORTHO05D005361 1.6e-07 61.6 146 32.9
Lj4g0005839 Lotus japonicus HOM05D004495 ORTHO05D005361 1.6e-07 61.6 158 31.6
Hund27364 Selenicereus undatus HOM05D001592 ORTHO05D001533 1.6e-07 61.6 83 41.0
HanXRQChr10g0301561 Helianthus annuus HOM05D007150 ORTHO05D008994 2.8e-07 60.8 83 37.3
Manes.07G069300 Manihot esculenta HOM05D007150 ORTHO05D008994 2.8e-07 60.8 143 29.4
SEGI_35079 Sequoiadendron giganteum HOM05D004495 ORTHO05D005361 3.7e-07 60.5 86 36.0
TPR.G19060 Trifolium pratense HOM05D007150 ORTHO05D008994 3.7e-07 60.5 107 36.4
Duzib116G0785 Durio zibethinus HOM05D004495 ORTHO05D005361 4.8e-07 60.1 389 40.4
Lj9P321T37 Lonicera japonica HOM05D007150 ORTHO05D008994 4.8e-07 60.1 86 38.4
CSS0011622 Camellia sinensis var. sinensis HOM05D004495 ORTHO05D005361 6.2e-07 59.7 395 44.6
RcHm_v2.0_Chr6g0255611 Rosa chinensis HOM05D007150 ORTHO05D008994 6.2e-07 59.7 86 38.4
Sp6g17460 Schrenkiella parvula HOM05D004495 ORTHO05D005361 6.2e-07 59.7 146 32.2
Glyma.02G051300 Glycine max HOM05D004495 ORTHO05D005361 8.2e-07 59.3 159 30.8
Sc16g0002410 Simmondsia chinensis HOM05D004495 ORTHO05D005361 8.2e-07 59.3 404 36.9
GSVIVG01003169001 Vitis vinifera HOM05D007150 ORTHO05D008994 8.2e-07 59.3 85 36.5
Hma1.2p1_0474F.1_g160660 Hydrangea macrophylla HOM05D007150 ORTHO05D008994 1.1e-06 58.9 87 40.2
Lsat_1_v5_gn_5_114620 Lactuca sativa HOM05D007150 ORTHO05D008994 1.1e-06 58.9 85 38.8
Pp3c19_5680 Physcomitrium patens HOM05D004495 ORTHO05D005361 1.1e-06 58.9 89 39.3
EL10Ac9g22300 Beta vulgaris HOM05D007150 ORTHO05D008994 1.4e-06 58.5 87 35.6
A02p09620 Brassica napus HOM05D004495 ORTHO05D005361 1.4e-06 58.5 142 33.1
ClCG02G006250 Citrullus lanatus HOM05D007150 ORTHO05D008994 1.4e-06 58.5 110 34.5
HanXRQChr09g0250571 Helianthus annuus HOM05D007150 ORTHO05D008994 1.4e-06 58.5 101 36.6
Sabra07G0014100 Salix brachista HOM05D004495 ORTHO05D005361 1.4e-06 58.5 409 37.7
Sabra16G0189500 Salix brachista HOM05D007150 ORTHO05D008994 1.4e-06 58.5 150 28.7
Carub.0005s0395 Capsella rubella HOM05D004495 ORTHO05D005361 1.8e-06 58.2 134 33.6
FAN20G1091 Fragaria x ananassa HOM05D007150 ORTHO05D008994 1.8e-06 58.2 86 37.2
FvH4_2g05350 Fragaria vesca HOM05D007150 ORTHO05D008994 2.4e-06 57.8 86 37.2
FAN15G2804 Fragaria x ananassa HOM05D007150 ORTHO05D008994 2.4e-06 57.8 86 37.2
BraA02t06026Z Brassica rapa HOM05D004495 ORTHO05D005361 3.1e-06 57.4 142 32.4
Gohir.A12G061500 Gossypium hirsutum HOM05D004495 ORTHO05D005361 3.1e-06 57.4 144 29.2
Nn5g30403 Nelumbo nucifera HOM05D007150 ORTHO05D008994 3.1e-06 57.4 108 35.2
CARHR105700 Cardamine hirsuta HOM05D007150 ORTHO05D008994 5.3e-06 56.6 88 39.8
CiPaw.07G055000 Carya illinoinensis HOM05D004495 ORTHO05D005361 5.3e-06 56.6 412 39.6
FAN24G2604 Fragaria x ananassa HOM05D007150 ORTHO05D008994 5.3e-06 56.6 101 35.6
QL11p034059 Quercus lobata HOM05D007150 ORTHO05D008994 5.3e-06 56.6 87 34.5
AagrBONN_evm.TU.Sc2ySwM_228.2039 Anthoceros agrestis HOM05D004495 ORTHO05D005361 6.9e-06 56.2 89 37.1
CsaV3_7G008270 Cucumis sativus L. HOM05D007150 ORTHO05D008994 6.9e-06 56.2 103 35.0
Cfa004568 Carpinus fangiana HOM05D007150 ORTHO05D008994 9.0e-06 55.8 151 28.5
Dinv15755 Davidia involucrata HOM05D007150 ORTHO05D008994 9.0e-06 55.8 109 35.8
Gohir.D01G007950 Gossypium hirsutum HOM05D007150 ORTHO05D008994 9.0e-06 55.8 85 35.3


User provided reference genes

Program Settings