Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 0.0e+00 1310.8 651 100.0
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 5.3e-247 857.8 660 64.4
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 3.4e-246 855.1 660 63.9
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.3e-245 853.2 658 65.0
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.8e-245 851.7 659 65.1
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 6.5e-245 850.9 661 65.4
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 1.1e-244 850.1 658 64.4
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 2.1e-243 845.9 658 63.8
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 7.9e-243 844.0 659 63.0
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 2.3e-242 842.4 655 64.6
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 6.7e-242 840.9 658 63.2
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 2.8e-240 835.5 661 62.8
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 2.4e-239 832.4 660 62.7
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 1.5e-238 829.7 662 63.0
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 4.5e-238 828.2 661 63.5
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 2.9e-237 825.5 662 62.4
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 1.9e-236 822.8 658 61.9
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 7.2e-236 820.8 688 60.6
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 3.6e-235 818.5 663 62.3
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 4.6e-235 818.1 661 62.0
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 8.8e-234 813.9 658 61.7
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 1.1e-231 807.0 659 62.2
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.2e-230 803.5 661 62.0
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 3.8e-229 798.5 664 59.3
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 1.4e-228 796.6 659 62.5
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 4.2e-228 795.0 657 61.8
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 5.2e-226 788.1 656 58.7
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 8.8e-226 787.3 646 61.6
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 1.5e-225 786.6 644 62.7
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 3.3e-225 785.4 661 60.1
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 5.7e-225 784.6 666 59.6
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 7.4e-225 784.3 655 59.5
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.3e-224 783.5 657 59.4
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 4.8e-224 781.6 664 59.6
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 6.3e-224 781.2 662 60.6
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 1.4e-223 780.0 654 60.9
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 9.1e-223 777.3 658 59.6
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 1.2e-222 776.9 661 58.4
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 1.2e-222 776.9 660 58.5
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 1.6e-222 776.5 661 60.7
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 2.0e-222 776.2 653 61.6
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 2.6e-222 775.8 658 61.2
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.5e-222 775.0 660 59.8
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.5e-222 775.0 660 59.8
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 4.5e-222 775.0 658 59.9
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 1.1e-220 770.4 659 60.7
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.9e-220 769.6 654 60.4
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 2.7e-219 765.8 658 60.0
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 6.1e-219 764.6 658 59.9
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 1.0e-218 763.8 661 56.9
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 3.0e-218 762.3 661 58.5
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 4.0e-218 761.9 650 60.3
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 4.0e-218 761.9 655 60.3
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 6.7e-218 761.1 654 59.6
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 8.8e-218 760.8 654 59.5
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 1.5e-217 760.0 652 59.0
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 2.0e-217 759.6 654 59.3
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 4.4e-217 758.4 662 57.9
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 5.7e-217 758.1 654 60.1
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 5.7e-217 758.1 658 58.5
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 9.7e-217 757.3 651 60.2
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 6.3e-216 754.6 664 58.1
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 8.2e-216 754.2 633 60.0
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 1.4e-215 753.4 662 58.2
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 1.8e-215 753.1 655 59.5
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 1.7e-213 746.5 662 59.1
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 3.8e-213 745.3 661 57.8
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 1.9e-212 743.0 666 58.6
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 2.5e-212 742.7 661 57.8
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 7.2e-212 741.1 650 58.2
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 2.1e-211 739.6 658 57.4
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 4.7e-211 738.4 663 57.6
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 1.4e-210 736.9 663 57.2
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 2.3e-210 736.1 664 57.8
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.1e-207 727.2 622 58.8
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 9.1e-207 724.2 539 64.9
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 1.6e-206 723.4 622 59.8
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 2.3e-205 719.5 657 57.1
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 3.2e-204 715.7 661 56.9
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.1e-199 700.7 657 52.2
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 5.9e-198 694.9 655 53.9
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 8.6e-197 691.0 656 54.4
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 8.0e-195 684.5 643 54.7
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 2.0e-193 679.9 658 53.5
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 2.4e-191 672.9 693 52.5
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 8.1e-179 631.3 589 51.8
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 3.7e-176 622.5 691 49.8
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 1.1e-175 620.9 588 55.1
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 1.7e-173 613.6 488 62.7
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.5e-172 609.8 628 53.2
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 1.4e-170 604.0 669 49.6
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 4.1e-167 592.4 592 54.4
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 2.7e-150 536.6 512 54.5
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 5.1e-149 532.3 595 49.7
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 5.1e-149 532.3 659 44.5
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.2e-136 490.3 648 44.9
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 3.8e-136 489.6 639 43.2
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.5e-132 477.6 549 49.5
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 9.3e-127 458.4 254 83.1
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 8.2e-123 445.3 480 50.2
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 5.0e-112 409.5 390 53.1
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 4.4e-100 369.8 490 46.1
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 8.0e-94 349.0 633 36.5
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 1.8e-93 347.8 178 87.1
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 1.2e-92 345.1 344 51.7
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 9.5e-87 325.5 293 58.4
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 2.4e-82 310.8 435 42.8
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 6.6e-80 302.8 197 71.6
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 2.4e-74 284.3 373 42.9
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 2.5e-55 221.1 170 63.5
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 3.6e-54 217.2 104 91.3
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 2.2e-51 208.0 106 84.9
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 2.9e-43 181.0 271 37.6
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 1.6e-38 165.2 231 38.1
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 7.6e-36 156.4 200 40.5
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.8e-35 154.1 178 47.8
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 2.4e-34 151.4 496 29.8
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 5.4e-34 150.2 137 58.4
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 4.9e-27 127.1 67 88.1
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.4e-26 125.6 155 48.4
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.2e-26 124.4 83 71.1
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 5.5e-26 123.6 58 84.5
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.1e-22 111.7 105 52.4
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 3.2e-18 97.8 71 62.0
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 1.8e-16 92.0 74 59.5
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 8.7e-16 89.7 76 59.2
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 1.5e-15 89.0 74 60.8
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 1.9e-15 88.6 74 59.5
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 7.4e-15 86.7 74 59.5
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 9.7e-15 86.3 74 58.1
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 3.7e-14 84.3 74 59.5
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 3.2e-10 71.2 75 52.0
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 3.2e-10 71.2 75 52.0
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 2.7e-09 68.2 105 38.1
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 5.7e-07 60.5 101 36.6


User provided reference genes

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