Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 9.7e-192 673.3 342 100.0
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 5.4e-134 481.5 343 72.3
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 7.1e-134 481.1 342 72.2
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 4.3e-131 471.9 342 70.8
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 1.6e-130 469.9 342 71.9
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 3.6e-130 468.8 346 72.5
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 3.6e-130 468.8 343 71.7
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 8.1e-130 467.6 347 70.0
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 6.9e-129 464.5 343 71.1
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 2.2e-127 459.5 343 69.1
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 7.1e-126 454.5 343 68.5
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 2.7e-125 452.6 343 68.8
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 6.0e-125 451.4 341 70.4
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 6.0e-125 451.4 349 66.2
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 1.7e-124 449.9 346 67.9
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 3.9e-124 448.7 343 66.5
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 5.1e-124 448.4 336 69.9
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 2.5e-123 446.0 345 67.8
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 7.3e-123 444.5 345 67.8
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.8e-122 442.6 345 67.8
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 8.1e-122 441.0 335 68.7
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.1e-121 440.7 336 67.9
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 3.1e-121 439.1 344 67.2
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.1e-121 439.1 343 65.9
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.0e-121 438.7 336 67.9
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 3.4e-120 435.6 344 66.9
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 9.9e-120 434.1 343 66.2
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.3e-119 433.7 340 67.1
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 1.7e-119 433.3 342 67.3
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 4.9e-119 431.8 344 67.4
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 6.4e-119 431.4 347 65.4
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 4.2e-118 428.7 344 68.6
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 5.4e-118 428.3 343 67.3
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 9.3e-118 427.6 348 66.1
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 9.3e-118 427.6 343 64.7
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 3.5e-117 425.6 357 66.7
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 4.6e-117 425.2 342 64.9
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 6.0e-117 424.9 344 64.8
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 1.3e-116 423.7 345 65.5
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 2.3e-116 422.9 342 65.8
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 2.5e-115 419.5 347 66.6
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 2.5e-115 419.5 331 68.6
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 7.4e-115 417.9 343 63.8
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.1e-114 416.4 336 66.1
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 2.1e-114 416.4 344 64.8
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.8e-114 416.0 343 64.4
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 2.8e-114 416.0 397 58.9
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.7e-114 415.6 336 66.7
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.7e-114 415.6 336 66.7
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 4.8e-114 415.2 344 64.0
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 6.2e-114 414.8 344 64.0
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 1.4e-113 413.7 344 63.4
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 3.1e-113 412.5 348 64.1
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 5.3e-113 411.8 344 64.2
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 6.9e-113 411.4 344 64.2
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 6.9e-113 411.4 342 64.9
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 2.0e-112 409.8 342 63.7
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 2.0e-112 409.8 408 55.4
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 9.9e-112 407.5 345 62.6
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 9.9e-112 407.5 347 62.8
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 1.3e-111 407.1 343 64.1
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 3.2e-110 402.5 343 61.5
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.5e-110 401.7 336 64.3
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 7.1e-110 401.4 345 63.8
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 2.7e-109 399.4 415 54.0
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.5e-109 399.1 336 64.0
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 4.6e-109 398.7 345 62.0
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 2.3e-108 396.4 344 61.3
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.3e-108 396.4 336 63.7
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 6.7e-108 394.8 343 64.1
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 6.7e-108 394.8 295 72.2
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.9e-107 393.3 345 62.6
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 3.3e-107 392.5 344 61.0
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 4.3e-107 392.1 350 61.1
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 1.3e-106 390.6 347 62.8
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 4.8e-106 388.7 346 62.1
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 4.8e-106 388.7 343 60.1
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 8.2e-106 387.9 344 60.8
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 8.2e-106 387.9 388 57.2
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.1e-105 387.5 347 61.4
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 7.6e-104 381.3 324 63.6
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.3e-103 380.6 347 60.5
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 4.9e-103 378.6 348 60.3
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 2.5e-102 376.3 345 59.1
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 5.5e-102 375.2 341 59.8
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 2.7e-101 372.9 340 61.2
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 1.3e-100 370.5 329 62.9
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 1.8e-100 370.2 346 61.3
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 6.7e-100 368.2 343 59.2
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 1.1e-99 367.5 348 58.9
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.1e-99 367.5 345 58.0
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.5e-99 367.1 344 59.6
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.9e-99 366.7 340 60.9
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 5.7e-99 365.2 339 59.9
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 7.4e-99 364.8 339 59.6
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 6.3e-98 361.7 350 58.6
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 1.4e-97 360.5 347 57.1
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 3.1e-97 359.4 351 55.0
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 4.1e-97 359.0 321 62.9
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 1.2e-96 357.5 338 59.5
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 4.5e-96 355.5 342 56.7
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 3.8e-95 352.4 344 57.0
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 5.0e-95 352.1 347 57.3
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.9e-94 350.1 339 57.8
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 3.2e-94 349.4 339 57.8
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.2e-94 349.4 342 57.9
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 4.2e-94 349.0 249 73.5
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 4.6e-93 345.5 339 59.3
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 4.6e-93 345.5 339 57.5
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.0e-92 344.4 339 56.6
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 3.9e-92 342.4 273 64.1
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.5e-91 339.7 348 52.0
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 4.3e-91 339.0 342 54.4
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 9.7e-91 337.8 336 58.3
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 1.7e-90 337.0 338 56.5
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.2e-90 336.7 338 53.3
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 9.1e-89 331.3 350 54.9
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 3.8e-87 325.9 338 54.7
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 3.8e-87 325.9 338 54.7
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 1.1e-86 324.3 345 57.4
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 1.9e-86 323.6 351 53.8
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 2.5e-86 323.2 328 57.3
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 5.5e-86 322.0 277 64.6
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 9.4e-86 321.2 326 56.7
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 1.2e-85 320.9 341 55.1
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 2.1e-85 320.1 341 55.1
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 7.9e-85 318.2 342 54.4
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 7.9e-85 318.2 342 55.0
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 2.3e-84 316.6 346 52.9
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 2.3e-84 316.6 343 54.8
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 2.3e-84 316.6 346 52.3
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 5.1e-84 315.5 343 52.8
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 5.1e-84 315.5 339 54.6
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 5.1e-84 315.5 345 51.0
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 6.7e-84 315.1 339 54.6
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.6e-83 313.2 248 66.9
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 5.7e-83 312.0 339 53.7
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 1.3e-82 310.8 339 53.7
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 2.8e-82 309.7 338 53.6
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 2.8e-82 309.7 338 53.6
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 1.8e-81 307.0 281 62.3
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.3e-79 300.8 342 54.4
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 9.7e-67 258.1 250 56.0
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 2.4e-65 253.4 343 47.8
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.1e-62 244.6 207 64.3
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 4.1e-57 226.1 348 41.7
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 3.0e-44 183.3 322 39.8
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.2e-35 154.8 240 42.5
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 1.5e-35 154.5 404 31.2
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 7.3e-30 135.6 154 51.9
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 6.4e-26 122.5 254 35.8
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.1e-25 121.7 155 45.8
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 2.8e-21 107.1 103 60.2
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.2e-19 101.7 151 40.4
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 7.3e-14 82.4 153 39.2
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 5.3e-12 76.3 345 25.5
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 1.7e-10 71.2 205 28.3
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 6.4e-10 69.3 181 33.1
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 4.2e-09 66.6 366 22.7
Pp3c7_3600 Physcomitrium patens HOM05D017133 ORTHO05D019609 1.3e-07 61.6 325 23.4
Pp3c24_15840 Physcomitrium patens HOM05D017133 ORTHO05D005490 6.6e-07 59.3 347 25.1
AagrBONN_evm.TU.Sc2ySwM_117.2972 Anthoceros agrestis HOM05D034434 ORTHO05D019609 5.6e-06 56.2 243 22.6


User provided reference genes

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