Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 6.0e-101 370.9 198 100.0
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 1.9e-54 216.5 167 72.5
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 3.5e-53 212.2 167 71.3
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 3.5e-53 212.2 163 73.0
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.4e-49 199.5 164 70.1
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.1e-49 199.1 173 63.6
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 6.9e-49 198.0 185 63.8
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 4.5e-48 195.3 167 67.1
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 6.5e-47 191.4 167 67.7
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 1.1e-46 190.7 169 66.9
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 5.5e-46 188.3 165 64.8
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 7.9e-45 184.5 161 65.2
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 6.7e-44 181.4 170 63.5
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 3.3e-43 179.1 170 61.8
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 4.3e-43 178.7 167 61.7
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 9.7e-43 177.6 166 62.7
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 9.7e-43 177.6 163 61.3
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 1.3e-42 177.2 166 61.4
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 1.3e-42 177.2 173 61.8
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 2.2e-42 176.4 157 65.0
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 2.8e-42 176.0 167 62.9
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 3.7e-42 175.6 166 60.2
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 3.7e-42 175.6 166 62.0
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 3.7e-42 175.6 158 62.7
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 4.8e-42 175.3 167 62.9
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 6.3e-42 174.9 167 60.5
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 6.3e-42 174.9 167 60.5
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.4e-41 173.7 165 61.2
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.4e-41 173.7 169 61.5
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 1.8e-41 173.3 167 62.9
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 1.2e-40 170.6 167 62.3
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 2.0e-40 169.9 147 65.3
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 2.6e-40 169.5 165 62.4
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 4.5e-40 168.7 165 61.2
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 5.9e-40 168.3 179 58.1
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 1.3e-39 167.2 165 59.4
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 1.3e-39 167.2 167 60.5
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.7e-39 166.8 147 63.3
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 2.2e-39 166.4 173 57.8
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 5.0e-39 165.2 169 60.4
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 6.5e-39 164.9 194 54.1
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.4e-38 163.7 164 59.8
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 1.9e-38 163.3 162 59.9
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 2.5e-38 162.9 154 61.7
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 4.2e-38 162.2 167 58.1
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 5.5e-38 161.8 162 59.9
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 5.5e-38 161.8 162 59.9
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 5.5e-38 161.8 165 60.0
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 7.2e-38 161.4 166 56.6
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 7.2e-38 161.4 123 73.2
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 7.2e-38 161.4 160 60.6
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 1.2e-37 160.6 162 59.3
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 2.7e-37 159.5 165 59.4
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.7e-37 159.5 174 56.9
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 4.7e-37 158.7 167 57.5
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 6.1e-37 158.3 165 57.6
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 7.9e-37 157.9 163 59.5
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 7.9e-37 157.9 156 56.4
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 1.4e-36 157.1 165 57.0
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.4e-36 157.1 170 56.5
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.8e-36 156.8 166 59.6
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 3.0e-36 156.0 158 59.5
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 3.9e-36 155.6 158 59.5
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 3.9e-36 155.6 166 56.0
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.1e-36 155.2 174 56.9
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 5.1e-36 155.2 159 59.7
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 8.8e-36 154.5 175 55.4
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 8.8e-36 154.5 152 58.6
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.0e-35 153.3 147 61.2
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 3.3e-35 152.5 167 56.9
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 3.3e-35 152.5 168 55.4
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 1.3e-34 150.6 151 58.9
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 1.3e-34 150.6 207 47.8
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.2e-34 149.8 168 56.0
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 2.8e-34 149.4 137 62.8
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 4.8e-34 148.7 180 53.3
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 6.3e-34 148.3 162 56.8
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 8.2e-34 147.9 151 58.3
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 4.1e-33 145.6 132 65.2
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 5.3e-33 145.2 166 57.2
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 9.1e-33 144.4 168 56.5
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 2.0e-32 143.3 158 57.6
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 7.7e-32 141.4 138 60.1
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 7.7e-32 141.4 138 60.1
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.7e-31 140.2 161 57.1
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 2.9e-31 139.4 167 55.1
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.9e-31 139.4 161 57.1
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 3.8e-31 139.0 184 51.6
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 5.0e-31 138.7 170 54.7
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 6.5e-31 138.3 162 53.1
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 8.5e-31 137.9 152 53.3
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 8.5e-31 137.9 150 56.0
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.1e-30 137.5 161 57.1
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.1e-30 137.5 161 56.5
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 1.1e-30 137.5 162 50.6
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 2.5e-30 136.3 181 50.8
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 3.2e-30 136.0 151 54.3
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 9.4e-30 134.4 150 58.7
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 1.2e-29 134.0 178 48.3
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 1.6e-29 133.7 151 53.6
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.1e-29 133.3 159 54.1
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 1.4e-28 130.6 161 53.4
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.6e-27 126.3 100 71.0
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 2.6e-27 126.3 156 47.4
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 4.4e-27 125.6 155 53.5
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.2e-26 123.2 165 47.9
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 3.7e-26 122.5 150 48.0
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 1.4e-25 120.6 148 48.0
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 3.1e-25 119.4 229 43.7
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 5.3e-25 118.6 123 56.1
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 2.7e-24 116.3 95 68.4
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.0e-23 114.4 116 56.0
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.7e-23 113.6 165 46.1
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.2e-23 113.2 159 49.1
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 5.0e-23 112.1 152 50.0
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 1.9e-22 110.2 159 45.9
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 4.2e-22 109.0 118 56.8
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 7.2e-22 108.2 151 47.0
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 9.4e-22 107.8 113 57.5
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 2.1e-21 106.7 118 55.9
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 3.6e-21 105.9 85 65.9
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 8.0e-21 104.8 158 46.2
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 1.4e-20 104.0 141 50.4
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 3.4e-19 99.4 157 43.3
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.8e-18 96.3 100 58.0
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 2.8e-18 96.3 86 59.3
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 3.7e-18 95.9 106 53.8
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 4.8e-18 95.5 122 46.7
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 6.3e-18 95.1 131 48.9
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 8.3e-18 94.7 81 70.4
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 1.6e-16 90.5 165 39.4
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 6.5e-15 85.1 56 75.0
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 1.5e-14 84.0 87 59.8
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 1.0e-12 77.8 95 51.6
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 2.3e-12 76.6 83 56.6
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 5.2e-12 75.5 91 56.0
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.5e-11 71.6 78 57.7
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 7.5e-11 71.6 78 57.7
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.8e-11 71.2 92 48.9
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 9.8e-11 71.2 160 36.9
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 1.3e-10 70.9 283 31.8
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-10 70.9 78 56.4
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 3.7e-10 69.3 97 51.5
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.1e-09 65.9 56 66.1
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 5.9e-08 62.0 55 54.5
PRCOL_00006426 Prasinoderma coloniale HOM05D004927 ORTHO05D005798 2.9e-07 59.7 61 47.5
A02p42760 Brassica napus HOM05D001512 ORTHO05D001574 7.3e-06 55.1 63 57.1


User provided reference genes

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