Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 1.9e-37 158.7 79 100.0
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 4.9e-30 134.0 79 79.7
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 4.9e-30 134.0 79 79.7
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 2.4e-29 131.7 79 79.7
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 3.2e-29 131.3 79 77.2
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 9.2e-29 129.8 78 78.2
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 75.9
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.6e-28 129.0 78 75.6
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 78.5
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 2.1e-28 128.6 79 78.5
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 2.7e-28 128.3 79 75.9
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 3.5e-28 127.9 79 75.9
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 3.5e-28 127.9 79 79.7
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 4.6e-28 127.5 79 75.9
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 7.8e-28 126.7 79 77.2
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.7e-27 125.6 76 76.3
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 2.3e-27 125.2 79 75.9
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.0e-27 124.8 79 74.7
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 3.9e-27 124.4 79 74.7
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 3.9e-27 124.4 79 73.4
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 5.1e-27 124.0 79 72.2
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 6.6e-27 123.6 79 77.2
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 8.7e-27 123.2 76 76.3
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 8.7e-27 123.2 77 75.3
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.5e-26 122.5 79 72.2
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.9e-26 122.1 79 72.2
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.3e-26 121.3 79 73.4
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 4.3e-26 120.9 77 71.4
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 72.2
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 72.2
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 70.9
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 70.9
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 73.4
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 73.4
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 70.9
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 4.3e-26 120.9 75 74.7
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 67.1
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 68.4
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 5.6e-26 120.6 74 77.0
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 5.6e-26 120.6 74 77.0
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 70.9
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 73.4
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 69.6
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 70.9
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 72.2
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 9.6e-26 119.8 76 73.7
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 9.6e-26 119.8 79 70.9
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 9.6e-26 119.8 79 70.9
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 1.2e-25 119.4 79 68.4
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.2e-25 119.4 79 70.9
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 1.6e-25 119.0 79 69.6
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.6e-25 119.0 78 70.5
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 2.1e-25 118.6 79 68.4
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 2.1e-25 118.6 80 76.2
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 2.1e-25 118.6 76 75.0
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 3.6e-25 117.9 79 70.9
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 4.7e-25 117.5 79 68.4
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 6.2e-25 117.1 76 71.1
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 70.9
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 8.1e-25 116.7 75 70.7
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 8.1e-25 116.7 79 69.6
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 8.1e-25 116.7 79 69.6
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 8.1e-25 116.7 79 70.9
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.1e-24 116.3 79 64.6
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.4e-24 115.9 77 68.8
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 2.4e-24 115.2 79 65.8
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 3.1e-24 114.8 79 67.1
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 3.1e-24 114.8 79 67.1
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 3.1e-24 114.8 79 67.1
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 3.1e-24 114.8 63 84.1
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 6.9e-24 113.6 79 65.8
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 6.9e-24 113.6 75 70.7
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 1.2e-23 112.8 79 65.8
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 1.5e-23 112.5 79 67.1
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.0e-23 112.1 76 68.4
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 2.0e-23 112.1 76 71.1
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.0e-23 112.1 79 63.3
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 2.6e-23 111.7 77 64.9
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.4e-23 111.3 79 65.8
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 4.4e-23 110.9 77 67.5
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 5.8e-23 110.5 62 82.3
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 5.8e-23 110.5 80 68.8
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 5.8e-23 110.5 79 67.1
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 7.6e-23 110.2 79 64.6
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 7.6e-23 110.2 79 64.6
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 9.9e-23 109.8 68 73.5
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 9.9e-23 109.8 69 69.6
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.7e-22 109.0 62 80.6
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.7e-22 109.0 73 69.9
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.7e-22 109.0 73 69.9
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.7e-22 109.0 71 67.6
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 1.7e-22 109.0 80 67.5
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 2.2e-22 108.6 75 69.3
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 2.2e-22 108.6 75 69.3
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 2.2e-22 108.6 75 69.3
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 2.2e-22 108.6 75 69.3
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 2.2e-22 108.6 77 62.3
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 2.2e-22 108.6 77 62.3
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 2.2e-22 108.6 66 77.3
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 2.9e-22 108.2 79 63.3
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 3.8e-22 107.8 64 78.1
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 63.3
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 4.9e-22 107.5 65 75.4
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 8.4e-22 106.7 79 62.0
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.1e-21 106.3 66 74.2
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.4e-21 105.1 76 67.1
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 3.2e-21 104.8 76 65.8
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 4.2e-21 104.4 79 60.8
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 5.4e-21 104.0 79 60.8
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 5.4e-21 104.0 70 64.3
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 7.1e-21 103.6 77 59.7
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 2.1e-20 102.1 69 69.6
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 2.7e-20 101.7 76 61.8
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.5e-20 101.3 71 66.2
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 4.6e-20 100.9 76 60.5
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 6.0e-20 100.5 76 60.5
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 6.0e-20 100.5 76 60.5
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 6.0e-20 100.5 76 60.5
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 6.0e-20 100.5 76 60.5
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 6.0e-20 100.5 69 65.2
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 7.8e-20 100.1 59 76.3
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 7.8e-20 100.1 65 72.3
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 1.3e-19 99.4 54 81.5
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.7e-19 99.0 76 55.3
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 3.9e-19 97.8 57 80.7
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.9e-18 95.5 73 58.9
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.5e-18 95.1 79 51.9
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 4.3e-18 94.4 66 62.1
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.6e-17 92.4 67 56.7
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.6e-17 92.4 76 53.9
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.1e-17 92.0 76 53.9
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 2.8e-17 91.7 62 66.1
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 2.8e-17 91.7 53 75.5
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 2.8e-17 91.7 57 70.2
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 3.6e-17 91.3 62 66.1
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 3.6e-17 91.3 55 76.4
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 6.2e-17 90.5 59 64.4
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 3.1e-16 88.2 69 53.6
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 6.9e-16 87.0 74 50.0
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 1.3e-14 82.8 59 64.4
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 8.7e-11 70.1 51 64.7
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 1.3e-09 66.2 64 50.0
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.6e-09 65.9 70 47.1
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.6e-09 65.9 64 46.9
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 9.0e-08 60.1 79 35.4
FAN18G4143 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.4e-06 53.9 77 40.3


User provided reference genes

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