Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 2.0e-147 526.2 365 100.0
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 7.7e-62 241.9 352 47.4
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 2.9e-61 240.0 345 49.3
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 1.1e-60 238.0 351 51.9
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 1.1e-60 238.0 380 47.6
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 1.9e-60 237.3 374 49.7
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 3.2e-60 236.5 365 49.6
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.1e-59 233.8 346 48.0
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.2e-56 223.8 344 48.0
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 3.7e-56 223.0 357 43.7
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 1.1e-55 221.5 379 45.1
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 1.4e-55 221.1 370 42.4
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 2.0e-54 217.2 370 42.4
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 3.0e-50 203.4 345 42.0
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 6.8e-50 202.2 373 39.1
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.8e-50 202.2 373 39.1
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 2.0e-49 200.7 345 42.9
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 4.4e-49 199.5 376 43.1
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.5e-49 198.7 373 38.6
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 9.8e-49 198.4 376 38.8
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.3e-48 198.0 376 39.9
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.3e-48 195.7 364 40.1
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 6.3e-48 195.7 374 39.3
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 8.3e-48 195.3 365 43.8
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.1e-47 194.9 370 41.9
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 3.1e-47 193.4 374 42.0
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 4.1e-47 193.0 357 40.9
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 5.4e-47 192.6 369 45.0
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 5.4e-47 192.6 375 37.9
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 7.0e-47 192.2 346 39.6
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 7.0e-47 192.2 375 40.0
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.2e-46 191.4 370 40.8
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 1.2e-46 191.4 370 40.8
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 2.0e-46 190.7 347 47.6
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 2.0e-46 190.7 383 37.6
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 2.7e-46 190.3 346 39.0
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 3.5e-46 189.9 387 38.8
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 1.0e-45 188.3 379 39.6
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.3e-45 188.0 366 38.5
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 5.0e-45 186.0 342 39.8
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 5.0e-45 186.0 392 37.2
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 8.6e-45 185.3 373 37.3
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.6e-45 185.3 373 37.3
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 8.6e-45 185.3 373 38.1
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.5e-44 184.5 366 38.5
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.5e-44 184.5 373 37.0
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.9e-44 184.1 369 38.5
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 2.5e-44 183.7 367 45.0
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 4.3e-44 183.0 344 39.2
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 5.6e-44 182.6 362 39.5
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 9.5e-44 181.8 358 39.1
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 9.5e-44 181.8 368 39.1
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.2e-43 181.4 366 37.7
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.6e-43 181.0 351 38.5
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.6e-43 181.0 374 37.4
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.6e-43 181.0 374 37.4
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.8e-43 180.3 355 38.3
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 8.0e-43 178.7 367 38.1
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 8.0e-43 178.7 375 39.5
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 1.4e-42 177.9 361 42.9
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 3.0e-42 176.8 363 36.4
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 4.0e-42 176.4 370 41.1
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 5.2e-42 176.0 350 44.6
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 5.2e-42 176.0 350 44.6
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 6.8e-42 175.6 364 37.6
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 8.9e-42 175.3 380 37.6
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 1.2e-41 174.9 372 40.9
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 1.2e-41 174.9 372 40.9
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 2.0e-41 174.1 364 38.5
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 3.4e-41 173.3 357 37.8
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 3.4e-41 173.3 392 35.2
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 5.7e-41 172.6 376 41.5
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 5.7e-41 172.6 376 41.5
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.3e-40 171.4 371 36.1
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 2.9e-40 170.2 364 39.0
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 3.7e-40 169.9 378 39.2
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 4.9e-40 169.5 352 39.2
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 6.4e-40 169.1 372 35.2
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.1e-39 168.3 353 41.9
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 1.4e-39 167.9 365 37.0
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 1.4e-39 167.9 371 35.8
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 1.8e-39 167.5 340 37.9
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 4.1e-39 166.4 365 44.7
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 1.2e-38 164.9 356 35.7
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 1.2e-38 164.9 379 41.4
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.2e-38 164.9 368 34.8
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 1.6e-38 164.5 368 36.7
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 2.0e-38 164.1 359 36.8
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.0e-38 164.1 353 36.8
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 2.7e-38 163.7 350 37.1
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 5.0e-37 159.5 361 35.2
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 1.5e-36 157.9 373 35.7
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 5.6e-36 156.0 364 35.4
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 5.6e-36 156.0 380 35.8
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 2.8e-35 153.7 362 35.9
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 4.7e-35 152.9 348 35.1
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 8.0e-35 152.1 372 43.0
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 8.0e-35 152.1 352 40.6
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.0e-34 151.8 361 34.6
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 2.3e-34 150.6 367 34.6
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 3.1e-34 150.2 331 39.0
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.1e-34 150.2 379 35.4
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 2.0e-33 147.5 332 35.5
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 3.4e-33 146.7 317 35.3
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 3.4e-33 146.7 361 37.1
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 3.4e-33 146.7 375 32.0
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 4.4e-33 146.4 326 35.9
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 9.8e-33 145.2 389 35.2
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.7e-32 144.4 394 32.2
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 2.2e-32 144.1 369 34.1
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 2.2e-32 144.1 376 34.3
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 2.2e-32 144.1 174 70.1
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.2e-32 144.1 360 34.7
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 1.2e-30 138.3 367 36.8
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 8.1e-27 125.6 286 37.4
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.4e-26 124.8 367 32.7
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 2.3e-26 124.0 374 36.6
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 8.9e-26 122.1 318 33.0
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.4e-25 120.2 374 35.0
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.4e-25 119.8 131 54.2
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 4.4e-25 119.8 287 34.5
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 7.5e-25 119.0 359 40.9
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 7.1e-23 112.5 165 46.7
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 7.1e-23 112.5 353 34.8
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 1.2e-22 111.7 358 31.3
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 3.0e-21 107.1 112 53.6
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 3.0e-21 107.1 345 35.7
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 7.3e-20 102.4 165 44.8
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 6.2e-19 99.4 331 37.5
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.1e-18 98.6 99 54.5
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 3.1e-18 97.1 343 29.7
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 3.1e-18 97.1 81 65.4
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 6.8e-18 95.9 318 32.4
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 1.1e-15 88.6 140 41.4
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 4.6e-14 83.2 355 38.0
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 1.0e-13 82.0 106 44.3
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.3e-12 77.0 68 61.8
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 4.7e-11 73.2 99 45.5
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 2.4e-10 70.9 106 46.2
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 3.1e-10 70.5 132 43.2
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.1e-10 70.5 96 44.8
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 2.2e-08 64.3 430 25.3
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 3.2e-07 60.5 125 40.0


User provided reference genes

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