Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 1.8e-120 436.0 242 100.0
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 1.1e-51 207.6 226 53.1
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.1e-48 197.6 197 57.4
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 4.2e-48 195.7 198 56.6
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 2.1e-47 193.4 205 54.6
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 4.6e-47 192.2 235 50.6
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 3.0e-46 189.5 208 54.8
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 5.1e-46 188.7 219 53.0
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 2.5e-45 186.4 215 53.0
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 5.7e-45 185.3 207 53.6
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.3e-44 184.1 213 49.8
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 2.8e-44 183.0 204 52.9
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 4.8e-44 182.2 218 52.3
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 1.1e-43 181.0 238 48.3
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 1.1e-43 181.0 214 51.9
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 3.1e-43 179.5 212 50.9
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 5.3e-43 178.7 211 51.7
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 5.3e-43 178.7 228 48.2
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 6.9e-43 178.3 217 49.8
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 9.1e-43 177.9 204 51.0
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 1.2e-42 177.6 215 51.6
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.5e-42 177.2 204 51.0
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 3.4e-42 176.0 204 51.0
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 4.5e-42 175.6 214 49.1
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 7.7e-42 174.9 238 48.7
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 1.0e-41 174.5 224 50.0
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 1.0e-41 174.5 203 52.7
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 2.2e-41 173.3 226 46.0
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 1.1e-40 171.0 211 50.7
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 7.2e-40 168.3 217 47.9
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 1.2e-39 167.5 226 47.8
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.6e-39 167.2 210 47.1
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 8.8e-38 161.4 234 44.4
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 4.4e-37 159.1 204 47.1
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 9.7e-37 157.9 208 45.7
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 4.8e-36 155.6 243 44.9
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 6.3e-36 155.2 228 46.1
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 1.4e-35 154.1 214 47.2
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 2.4e-35 153.3 197 49.2
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 2.4e-35 153.3 205 46.3
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 4.1e-35 152.5 215 43.7
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 7.0e-35 151.8 227 44.1
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 7.0e-35 151.8 209 46.4
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 1.6e-34 150.6 223 44.8
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 2.0e-34 150.2 235 43.0
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 4.5e-34 149.1 207 46.4
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 5.9e-34 148.7 204 44.1
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 1.0e-33 147.9 228 44.7
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 1.3e-33 147.5 178 50.6
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.7e-33 147.1 208 45.2
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 3.8e-33 146.0 224 43.3
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 6.5e-33 145.2 225 42.2
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 6.5e-33 145.2 234 42.7
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 6.5e-33 145.2 210 42.4
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 8.5e-33 144.8 202 45.0
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 1.5e-32 144.1 254 40.6
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 1.9e-32 143.7 204 47.1
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 1.9e-32 143.7 208 47.1
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 2.5e-32 143.3 223 41.3
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 2.5e-32 143.3 223 41.3
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 2.5e-32 143.3 225 41.3
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.2e-32 142.5 212 45.3
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 7.2e-32 141.7 235 41.7
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 9.4e-32 141.4 214 44.4
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 9.4e-32 141.4 212 44.8
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 9.4e-32 141.4 206 47.1
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 1.2e-31 141.0 203 46.3
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 1.2e-31 141.0 223 41.3
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 1.2e-31 141.0 201 44.8
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 1.6e-31 140.6 210 46.7
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.6e-31 140.6 212 44.8
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 2.7e-31 139.8 227 40.1
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 2.7e-31 139.8 198 45.5
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.6e-31 139.4 223 43.5
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 3.6e-31 139.4 226 44.2
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 4.7e-31 139.0 233 42.1
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 4.7e-31 139.0 198 42.4
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 1.0e-30 137.9 241 41.9
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 1.4e-30 137.5 174 49.4
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 2.3e-30 136.7 224 40.2
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 2.3e-30 136.7 213 42.7
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 3.0e-30 136.3 240 41.7
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 8.8e-30 134.8 214 43.0
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 8.8e-30 134.8 208 41.3
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 2.0e-29 133.7 204 40.7
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 2.6e-29 133.3 233 41.2
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 3.3e-29 132.9 237 41.4
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 4.4e-29 132.5 234 41.9
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 4.4e-29 132.5 219 41.6
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 4.4e-29 132.5 236 41.9
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 4.4e-29 132.5 212 42.5
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 7.5e-29 131.7 210 45.2
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 7.5e-29 131.7 177 46.9
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 9.7e-29 131.3 218 39.9
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 9.7e-29 131.3 218 39.9
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 1.7e-28 130.6 237 40.9
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 1.7e-28 130.6 208 42.3
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 3.7e-28 129.4 231 43.3
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 8.2e-28 128.3 220 38.2
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 1.8e-27 127.1 234 39.7
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 2.4e-27 126.7 289 34.6
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 3.1e-27 126.3 204 40.2
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 9.1e-27 124.8 181 45.9
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 2.7e-26 123.2 240 40.0
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 5.9e-26 122.1 278 37.1
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 6.5e-25 118.6 237 40.5
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 6.5e-25 118.6 207 41.5
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 8.5e-25 118.2 205 39.5
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 3.7e-20 102.8 163 41.7
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 2.4e-19 100.1 250 35.6
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 1.0e-17 94.7 293 32.4
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 6.5e-17 92.0 135 43.0
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.7e-15 85.9 93 52.7
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 6.1e-15 85.5 94 51.1
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 8.8e-14 81.6 215 33.5
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 2.6e-13 80.1 96 50.0
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 1.7e-12 77.4 121 44.6
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 2.8e-12 76.6 72 52.8
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 2.4e-11 73.6 221 29.0
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 1.2e-07 61.2 80 45.0
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 8.0e-07 58.5 56 53.6
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 4.0e-06 56.2 230 26.1


User provided reference genes

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