Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 8.0e-211 736.9 381 100.0
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 6.8e-194 680.6 368 95.7
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 3.9e-181 638.3 369 88.3
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 5.6e-180 634.4 367 87.2
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 1.2e-179 633.3 368 87.2
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 8.0e-179 630.6 367 87.7
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 8.0e-179 630.6 367 86.6
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 1.1e-178 630.2 367 87.7
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 4.0e-178 628.2 367 87.5
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 6.8e-178 627.5 367 87.5
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 6.8e-178 627.5 367 87.5
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 1.5e-177 626.3 368 86.1
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 1.5e-177 626.3 364 87.4
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 2.6e-177 625.5 364 86.3
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 3.4e-177 625.2 367 85.8
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 3.4e-177 625.2 367 85.8
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 3.4e-177 625.2 367 85.8
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 3.4e-177 625.2 364 86.3
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 1.3e-176 623.2 367 86.4
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 3.7e-176 621.7 364 86.8
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 3.7e-176 621.7 364 86.8
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 3.7e-176 621.7 368 87.5
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 3.7e-176 621.7 367 84.7
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 4.9e-176 621.3 367 86.9
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 8.3e-176 620.5 364 86.8
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 1.4e-175 619.8 364 86.5
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 3.2e-175 618.6 367 84.7
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 4.1e-175 618.2 367 85.8
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 5.4e-175 617.8 364 86.8
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 5.4e-175 617.8 364 86.3
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 5.4e-175 617.8 367 86.1
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 1.2e-174 616.7 364 86.8
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 3.5e-174 615.1 364 86.3
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 4.6e-174 614.8 364 84.6
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 6.0e-174 614.4 366 86.1
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 6.0e-174 614.4 367 85.8
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 7.8e-174 614.0 367 85.6
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 1.0e-173 613.6 366 84.2
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 1.0e-173 613.6 364 86.3
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 1.7e-173 612.8 361 86.1
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 1.7e-173 612.8 364 85.7
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 8.6e-173 610.5 367 85.0
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 8.6e-173 610.5 367 85.8
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 8.6e-173 610.5 364 84.6
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 1.1e-172 610.1 367 85.3
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 1.9e-172 609.4 368 84.5
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 1.9e-172 609.4 367 82.8
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 2.5e-172 609.0 364 85.2
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 3.3e-172 608.6 364 84.6
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 4.3e-172 608.2 370 84.1
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 4.3e-172 608.2 368 84.2
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 5.6e-172 607.8 364 84.9
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 7.3e-172 607.4 365 84.9
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 9.5e-172 607.1 370 83.8
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 9.5e-172 607.1 365 84.4
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 1.2e-171 606.7 364 83.8
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 3.6e-171 605.1 367 83.1
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 4.7e-171 604.7 367 83.7
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 4.7e-171 604.7 367 84.5
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 6.2e-171 604.4 364 83.2
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 6.2e-171 604.4 365 84.1
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 6.2e-171 604.4 367 83.9
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 1.4e-170 603.2 364 84.3
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 2.3e-170 602.4 367 82.8
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 4.0e-170 601.7 364 82.7
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 4.0e-170 601.7 364 84.1
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 4.0e-170 601.7 367 82.6
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 5.2e-170 601.3 364 84.6
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 5.2e-170 601.3 364 82.7
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 5.2e-170 601.3 364 82.7
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 6.8e-170 600.9 364 83.8
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 1.2e-169 600.1 367 83.1
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 1.2e-169 600.1 363 84.6
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.5e-169 599.7 364 84.6
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 1.5e-169 599.7 364 82.7
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 1.5e-169 599.7 367 82.6
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 3.4e-169 598.6 364 83.5
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 5.8e-169 597.8 367 82.0
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 9.9e-169 597.0 367 82.6
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.3e-168 596.7 364 83.0
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 4.9e-168 594.7 364 82.7
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 8.3e-168 594.0 364 83.0
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 8.3e-168 594.0 390 78.5
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 1.9e-167 592.8 366 83.9
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 7.1e-167 590.9 364 83.0
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 9.2e-167 590.5 365 83.3
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 1.6e-166 589.7 367 83.1
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 4.6e-166 588.2 364 80.8
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 7.8e-166 587.4 367 80.7
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 1.0e-165 587.0 429 73.9
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 1.7e-165 586.3 363 82.4
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 6.6e-165 584.3 367 79.6
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 8.6e-165 583.9 364 81.6
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 1.1e-164 583.6 367 80.7
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 1.9e-164 582.8 394 78.4
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 2.5e-164 582.4 367 80.4
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 2.5e-164 582.4 367 79.6
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 3.3e-164 582.0 402 75.6
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 3.1e-162 575.5 390 76.7
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 2.2e-160 569.3 363 82.1
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 2.9e-160 568.9 364 80.8
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 1.4e-159 566.6 367 80.1
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 3.9e-157 558.5 364 79.9
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 8.7e-157 557.4 364 79.4
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 1.2e-155 553.5 394 75.1
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 3.1e-154 548.9 325 86.8
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 5.3e-154 548.1 368 79.1
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 2.0e-153 546.2 479 63.5
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 3.4e-153 545.4 368 75.0
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 4.4e-153 545.0 369 76.4
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 6.4e-152 541.2 368 73.9
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 4.2e-151 538.5 367 73.8
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 3.9e-149 531.9 367 73.8
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 6.6e-149 531.2 370 74.1
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 4.3e-148 528.5 368 73.1
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 3.1e-146 522.3 368 72.6
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 3.1e-146 522.3 369 72.4
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 4.2e-143 511.9 364 73.6
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 7.1e-143 511.1 369 70.7
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 7.4e-140 501.1 357 72.0
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 2.0e-137 493.0 390 70.0
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 4.8e-131 471.9 391 68.0
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 3.1e-130 469.2 280 85.7
Lj5g0002346 Lotus japonicus HOM05D003579 ORTHO05D004266 2.9e-128 462.6 361 69.0
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 4.2e-127 458.8 263 87.1
Hund22318 Selenicereus undatus HOM05D003579 ORTHO05D004266 1.3e-123 447.2 265 86.8
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 5.9e-121 438.3 301 73.8
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 1.4e-117 427.2 366 61.2
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 4.3e-116 422.2 264 82.6
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 3.7e-115 419.1 245 86.5
BcaB04g17424 Brassica carinata HOM05D003579 ORTHO05D004266 3.1e-106 389.4 292 72.3
Oeu023523.1 Olea europaea HOM05D003579 ORTHO05D004266 1.2e-105 387.5 215 91.2
BraA05t21814Z Brassica rapa HOM05D003579 ORTHO05D004266 3.8e-104 382.5 261 76.2
C05p44830 Brassica napus HOM05D003579 ORTHO05D004266 1.4e-103 380.6 261 77.0
MCO02G001 Micromonas commoda HOM05D003579 ORTHO05D004266 1.9e-95 353.6 353 55.5
vmacro17765 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 1.1e-87 327.8 352 55.7
Cre13.g607450 Chlamydomonas reinhardtii HOM05D003579 ORTHO05D004266 1.8e-85 320.5 393 50.1
SEGI_07046 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 8.3e-75 285.0 193 76.2
Hma1.2p1_0385F.1_g141530 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 3.2e-74 283.1 158 87.3
Hma1.2p1_1785F.1_g302226 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 3.2e-74 283.1 158 87.3
SEGI_25290 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 4.1e-74 282.7 158 87.3
Hma1.2p1_0385F.1_g141540 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 7.0e-74 282.0 155 88.4
BraA05t21824Z Brassica rapa HOM05D003579 ORTHO05D004266 3.5e-73 279.6 198 74.2
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 3.6e-70 269.6 333 46.2
BolC5t33210H Brassica oleracea HOM05D003579 ORTHO05D004266 8.3e-67 258.5 166 80.1
Glyma.15G201250 Glycine max HOM05D003579 ORTHO05D004266 1.6e-57 227.6 143 77.6
ClCG04G012780 Citrullus lanatus HOM05D003579 ORTHO05D004266 9.9e-52 208.4 110 92.7
Lsat_1_v5_gn_1_111321 Lactuca sativa HOM05D003579 ORTHO05D004266 9.2e-50 201.8 129 79.1
Cfa023793 Carpinus fangiana HOM05D003579 ORTHO05D004266 6.8e-45 185.7 325 37.2
QL10p037250 Quercus lobata HOM05D003579 ORTHO05D004266 3.8e-43 179.9 98 89.8
AUR62038598 Chenopodium quinoa HOM05D003579 ORTHO05D004266 1.1e-42 178.3 102 86.3
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 2.5e-39 167.2 105 79.0
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 1.4e-34 151.4 96 77.1
ClCG04G012770 Citrullus lanatus HOM05D003579 ORTHO05D004266 3.5e-33 146.7 89 87.6
ClCG04G012750 Citrullus lanatus HOM05D003579 ORTHO05D004266 7.9e-33 145.6 166 49.4
SGA_v2.0_scaffold67G22627 Striga asiatica HOM05D003579 ORTHO05D004266 1.1e-29 135.2 116 62.9
Lsat_1_v5_gn_7_12281 Lactuca sativa HOM05D003579 ORTHO05D004266 3.2e-26 123.6 93 68.8
Psat0s1042g0080 Pisum sativum HOM05D003579 ORTHO05D004266 2.8e-22 110.5 83 66.3
Oeu023525.2 Olea europaea HOM05D003579 ORTHO05D004266 6.9e-21 105.9 69 73.9
Eucgr.E02122 Eucalyptus grandis HOM05D003579 ORTHO05D004266 1.3e-19 101.7 60 81.7
Lsat_1_v5_gn_6_63160 Lactuca sativa HOM05D002699 ORTHO05D002931 3.8e-19 100.1 79 67.1
Lalb_Chr14g0370511 Lupinus albus HOM05D003579 ORTHO05D004266 4.9e-19 99.8 60 78.3
VMungo1383G3479 Vigna mungo HOM05D003579 ORTHO05D004266 4.2e-18 96.7 107 51.4
Potri.011G011650 Populus trichocarpa HOM05D003579 ORTHO05D004266 9.3e-18 95.5 50 90.0
Lsat_1_v5_gn_8_41041 Lactuca sativa HOM05D003579 ORTHO05D005739 2.7e-17 94.0 64 76.6
Lj3g0016828 Lotus japonicus HOM05D003579 ORTHO05D004266 2.7e-17 94.0 125 40.0
Lsat_1_v5_gn_6_16260 Lactuca sativa HOM05D003579 ORTHO05D025634 2.3e-16 90.9 67 65.7
Lsat_1_v5_gn_6_17001 Lactuca sativa HOM05D003579 ORTHO05D025634 3.0e-16 90.5 67 67.2
BcaB04g17425 Brassica carinata HOM05D003579 ORTHO05D004266 5.1e-16 89.7 64 67.2
Lsat_1_v5_gn_4_76120 Lactuca sativa HOM05D002699 ORTHO05D002931 8.7e-16 89.0 79 60.8
ClCG04G012790 Citrullus lanatus HOM05D003579 ORTHO05D004266 1.1e-15 88.6 46 89.1
arahy.Tifrunner.gnm1.ann1.U86FK3 Arachis hypogaea HOM05D003579 ORTHO05D009264 4.3e-15 86.7 86 60.5
Lsat_1_v5_gn_5_188701 Lactuca sativa HOM05D003579 ORTHO05D025634 2.1e-14 84.3 70 62.9
Lj1g0020491 Lotus japonicus HOM05D003579 ORTHO05D004266 3.1e-13 80.5 106 38.7
Psat7g138600 Pisum sativum HOM05D003579 ORTHO05D016333 2.6e-12 77.4 91 51.6
Lsat_1_v5_gn_2_30601 Lactuca sativa HOM05D000929 ORTHO05D003255 1.9e-10 71.2 80 46.2
Lsat_1_v5_gn_2_16661 Lactuca sativa HOM05D000929 ORTHO05D003255 2.5e-10 70.9 55 58.2
Glyma.18G156700 Glycine max HOM05D003579 ORTHO05D025634 4.6e-09 66.6 38 84.2
Eucgr.J00713 Eucalyptus grandis HOM05D000222 ORTHO05D000329 3.9e-08 63.5 30 93.3
SGA_v2.0_scaffold258G45738 Striga asiatica HOM05D000002 ORTHO05D000001 2.5e-07 60.8 58 56.9
Oeu016194.1 Olea europaea HOM05D002938 ORTHO05D002074 3.3e-07 60.5 49 61.2


User provided reference genes

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