Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 1.5e-175 619.4 303 100.0
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 1.1e-157 560.1 364 79.7
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 9.1e-109 397.5 364 56.9
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 2.0e-108 396.4 364 57.1
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 5.9e-108 394.8 364 56.6
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 1.3e-107 393.7 357 58.0
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 1.3e-107 393.7 364 56.6
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 1.7e-107 393.3 363 57.3
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 3.8e-107 392.1 364 56.0
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 1.5e-106 390.2 364 56.0
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 7.5e-103 377.9 363 53.7
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 6.3e-102 374.8 360 53.3
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 2.0e-100 369.8 357 54.6
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 7.7e-100 367.9 357 55.2
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 1.0e-99 367.5 354 53.7
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 5.0e-99 365.2 354 54.0
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 6.5e-99 364.8 366 51.9
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 8.6e-99 364.4 364 51.1
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 2.5e-98 362.8 366 52.2
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 2.1e-97 359.8 362 53.9
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 3.6e-97 359.0 366 51.6
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 1.8e-96 356.7 355 53.0
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 2.3e-96 356.3 362 51.1
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 8.8e-96 354.4 365 50.4
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 1.2e-95 354.0 366 50.8
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 2.6e-95 352.8 355 53.5
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 3.4e-95 352.4 365 50.1
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 4.4e-95 352.1 365 49.9
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 7.5e-95 351.3 372 50.3
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 9.8e-95 350.9 357 52.1
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 1.3e-94 350.5 357 51.8
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 1.3e-94 350.5 367 50.4
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 4.9e-94 348.6 366 51.1
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 6.3e-94 348.2 367 50.1
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 8.3e-94 347.8 367 49.6
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 8.3e-94 347.8 349 54.4
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 1.4e-93 347.1 365 51.2
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 1.8e-93 346.7 364 48.6
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 2.4e-93 346.3 360 49.4
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 3.1e-93 345.9 362 50.3
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 4.1e-93 345.5 356 53.4
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 1.2e-92 344.0 369 48.8
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 1.2e-92 344.0 363 49.0
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 1.2e-92 344.0 378 48.9
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 1.6e-92 343.6 366 50.3
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 1.6e-92 343.6 360 49.2
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 1.6e-92 343.6 360 49.2
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 2.0e-92 343.2 365 49.6
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 2.7e-92 342.8 360 48.9
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 2.7e-92 342.8 356 49.4
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 4.5e-92 342.0 364 48.4
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 4.5e-92 342.0 361 50.7
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 1.0e-91 340.9 365 49.3
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 2.3e-91 339.7 366 50.5
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 2.9e-91 339.3 363 49.6
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 2.5e-90 336.3 364 51.6
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 9.5e-90 334.3 362 49.7
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 9.5e-90 334.3 362 49.7
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 3.6e-89 332.4 363 49.6
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 1.0e-88 330.9 358 50.0
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 1.8e-88 330.1 363 49.6
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 1.8e-88 330.1 362 48.9
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 6.8e-88 328.2 366 50.5
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 6.8e-88 328.2 347 51.9
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 6.8e-88 328.2 354 48.9
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 1.2e-87 327.4 363 49.0
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 1.5e-87 327.0 365 47.1
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 9.8e-87 324.3 353 49.9
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 1.4e-85 320.5 357 48.5
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 4.1e-85 318.9 366 48.6
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 9.2e-85 317.8 368 47.3
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 9.2e-85 317.8 350 50.3
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 1.0e-83 314.3 353 46.7
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 2.3e-83 313.2 352 46.6
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 1.9e-82 310.1 359 47.1
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 2.5e-82 309.7 359 47.1
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 5.6e-82 308.5 359 46.5
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 2.1e-81 306.6 356 45.8
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 2.1e-81 306.6 355 48.2
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 1.4e-80 303.9 349 47.0
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 1.8e-80 303.5 364 45.1
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 1.8e-80 303.5 361 45.7
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 1.2e-79 300.8 360 47.2
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 1.5e-79 300.4 356 44.7
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 1.5e-79 300.4 359 45.4
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 9.8e-79 297.7 349 46.1
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 1.3e-78 297.4 352 46.9
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 1.7e-78 297.0 349 44.4
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 4.9e-78 295.4 351 47.0
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 1.4e-77 293.9 358 44.7
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 2.4e-77 293.1 352 44.9
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 7.8e-76 288.1 349 44.7
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 6.2e-73 278.5 362 41.7
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 6.4e-70 268.5 356 42.7
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 2.1e-68 263.5 352 41.8
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 3.9e-59 232.6 274 46.0
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 2.6e-55 219.9 276 44.2
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 1.9e-53 213.8 363 36.6
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 1.5e-50 204.1 360 34.2
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 5.1e-43 179.1 151 56.3
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 1.2e-39 167.9 351 29.1
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 1.7e-38 164.1 355 30.1
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 2.1e-36 157.1 126 57.9
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 5.6e-34 149.1 158 48.7
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 1.0e-19 101.7 126 39.7
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 2.2e-17 94.0 239 26.4
PRCOL_00004193 Prasinoderma coloniale HOM05D005976 ORTHO05D007149 1.4e-11 74.7 124 32.3


User provided reference genes

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