Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 7.2e-37 156.8 81 100.0
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 4.9e-17 90.9 77 53.2
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 1.9e-16 89.0 81 64.2
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 1.6e-15 85.9 81 63.0
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 2.7e-15 85.1 78 51.3
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 3.5e-15 84.7 83 49.4
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 6.0e-15 84.0 63 58.7
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 7.8e-15 83.6 62 59.7
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 7.8e-15 83.6 81 46.9
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 1.0e-14 83.2 80 62.5
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 1.0e-14 83.2 51 62.7
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 1.3e-14 82.8 76 63.2
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 1.7e-14 82.4 51 70.6
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 1.7e-14 82.4 80 58.8
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 1.7e-14 82.4 76 63.2
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 2.3e-14 82.0 79 50.6
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 3.9e-14 81.3 77 59.7
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 8.6e-14 80.1 85 50.6
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 8.6e-14 80.1 68 54.4
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 8.6e-14 80.1 64 56.2
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 8.6e-14 80.1 80 61.2
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.9e-13 79.0 63 52.4
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 1.9e-13 79.0 63 54.0
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 1.9e-13 79.0 63 54.0
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 1.9e-13 79.0 63 54.0
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 1.9e-13 79.0 59 57.6
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 2.5e-13 78.6 61 57.4
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 3.3e-13 78.2 61 55.7
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 7.3e-13 77.0 62 53.2
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 9.5e-13 76.6 80 58.8
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 9.5e-13 76.6 78 55.1
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 9.5e-13 76.6 82 54.9
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 1.2e-12 76.3 79 51.9
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 1.2e-12 76.3 68 50.0
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.6e-12 75.9 60 56.7
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 1.6e-12 75.9 63 54.0
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 1.6e-12 75.9 63 54.0
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 2.1e-12 75.5 61 50.8
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.8e-12 75.1 64 54.7
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 4.7e-12 74.3 55 56.4
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 8.1e-12 73.6 58 58.6
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 1.1e-11 73.2 62 50.0
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 2.3e-11 72.0 82 57.3
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 2.3e-11 72.0 50 58.0
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 3.1e-11 71.6 80 56.2
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 5.2e-11 70.9 49 59.2
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 6.8e-11 70.5 80 55.0
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 6.8e-11 70.5 80 55.0
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 6.8e-11 70.5 59 59.3
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 6.8e-11 70.5 56 53.6
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 6.8e-11 70.5 80 58.8
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 8.9e-11 70.1 57 56.1
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 1.2e-10 69.7 80 56.2
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 1.2e-10 69.7 64 51.6
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 1.5e-10 69.3 58 55.2
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 2.0e-10 68.9 80 55.0
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 2.0e-10 68.9 80 55.0
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 2.0e-10 68.9 80 55.0
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 2.0e-10 68.9 45 64.4
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 2.0e-10 68.9 45 64.4
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 2.0e-10 68.9 45 64.4
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 2.0e-10 68.9 76 44.7
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 2.6e-10 68.6 54 57.4
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 2.6e-10 68.6 58 53.4
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 4.4e-10 67.8 47 61.7
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 4.4e-10 67.8 58 48.3
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 5.8e-10 67.4 51 60.8
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 5.8e-10 67.4 54 53.7
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 3.7e-09 64.7 80 52.5
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 3.7e-09 64.7 64 50.0
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 3.7e-09 64.7 65 50.8
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 4.9e-09 64.3 58 51.7
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 6.4e-09 63.9 65 50.8
ClCG02G010380 Citrullus lanatus HOM05D007709 ORTHO05D009577 1.4e-08 62.8 46 54.3
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 5.4e-08 60.8 78 42.3
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 5.4e-08 60.8 78 42.3
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 7.1e-08 60.5 47 53.2
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 3.5e-07 58.2 49 51.0
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 1.3e-06 56.2 54 48.1
Eucgr.G00244 Eucalyptus grandis HOM05D007709 ORTHO05D009577 3.0e-06 55.1 48 47.9
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 3.0e-06 55.1 76 42.1
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 3.0e-06 55.1 76 42.1
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 6.6e-06 53.9 45 51.1
Eucgr.G00245 Eucalyptus grandis HOM05D007709 ORTHO05D009577 8.6e-06 53.5 47 48.9


User provided reference genes

Program Settings