Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 2229.5 1167 100.0
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1422.9 1172 65.4
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1410.2 1172 65.3
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1401.0 1195 64.9
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1391.7 1174 64.3
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1385.9 1171 65.0
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1372.5 1179 62.2
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1352.4 1173 62.1
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1340.9 1194 62.1
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1337.8 1045 65.7
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1337.0 1156 62.5
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1332.0 1170 61.8
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1330.5 1167 62.8
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1328.5 1150 63.5
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1309.7 1042 64.7
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1298.1 1176 61.9
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1296.6 1142 61.2
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1295.4 1174 60.6
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1291.2 1237 58.1
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1287.7 1169 60.3
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1286.9 1169 58.9
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1284.6 1170 60.4
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1282.7 1169 60.1
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1278.1 1187 61.4
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1278.1 1166 61.0
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1272.7 1168 60.2
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1268.8 1177 60.5
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1267.3 1160 59.0
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1266.9 1145 60.0
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1266.1 1160 57.8
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1265.4 1172 60.0
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1263.4 1172 60.0
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1262.7 1175 59.8
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1252.3 1177 57.3
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1246.9 1175 58.0
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1242.6 1239 55.4
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1234.2 1171 58.1
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1232.6 1172 58.5
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1230.3 1124 60.1
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1229.2 1169 58.5
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1224.9 1177 57.6
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1224.2 1179 57.7
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1223.8 1177 57.8
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1218.4 1166 57.6
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1216.4 1173 57.2
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1216.4 1018 61.2
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1215.3 1164 57.1
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1213.7 1163 57.0
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1213.4 1170 58.6
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1211.4 1172 57.3
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1211.1 1182 56.8
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1210.3 1150 57.7
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1209.1 1181 57.9
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1209.1 1172 56.9
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1207.2 1166 57.4
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1204.5 1169 58.0
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1201.0 1219 55.8
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1195.3 1044 59.2
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 0.0e+00 1192.9 1061 61.9
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1187.2 1166 56.3
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1182.5 945 64.0
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1179.9 1094 59.5
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1148.3 1196 54.6
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1145.6 1356 51.4
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1138.6 1204 53.4
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1131.3 1122 56.5
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1126.3 1173 53.5
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1125.2 1170 52.8
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1119.0 1161 53.3
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1119.0 1161 53.3
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1115.9 1173 52.5
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1107.4 1164 51.8
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1096.6 1173 52.5
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1091.6 1512 43.1
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1090.1 1174 53.1
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1089.3 1157 53.2
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1086.6 1164 52.7
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1076.6 1161 53.1
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 8.0e-312 1073.9 997 56.9
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 9.6e-308 1060.4 1147 51.4
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 7.4e-300 1034.2 1168 50.5
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 2.0e-297 1026.2 1048 53.5
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 6.1e-294 1014.6 1169 49.9
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 3.8e-288 995.3 1031 51.0
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 4.0e-277 958.7 1035 49.1
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 9.4e-263 911.0 1257 43.8
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 3.7e-259 899.0 968 51.2
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 5.2e-245 852.0 1205 42.4
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 7.8e-233 811.6 719 57.4
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 4.9e-227 792.3 1055 45.1
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 1.4e-221 774.2 733 55.4
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.6e-220 770.0 848 52.4
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 1.8e-205 720.7 634 58.2
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 3.1e-197 693.3 666 55.9
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 5.3e-197 692.6 658 56.1
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 1.3e-192 677.9 795 51.1
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 2.5e-186 657.1 1170 37.8
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.3e-182 644.8 965 39.3
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 9.0e-181 638.6 1035 36.1
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 7.4e-175 619.0 660 51.8
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 2.0e-164 584.3 1069 35.8
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 2.5e-162 577.4 485 60.8
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 3.7e-158 563.5 1055 35.4
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 9.8e-127 459.1 1228 30.1
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 2.7e-108 397.9 427 53.2
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 1.3e-102 379.0 428 52.1
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.1e-56 226.5 275 43.6
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 3.6e-52 211.5 179 57.0
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 1.2e-28 133.3 116 56.9
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 4.0e-27 128.3 497 24.9
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 5.4e-16 91.3 96 57.3
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 6.6e-14 84.3 71 60.6
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 3.6e-12 78.6 81 53.1
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 1.4e-11 76.6 119 41.2
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 3.1e-11 75.5 59 64.4
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 4.4e-10 71.6 74 44.6
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 3.7e-09 68.6 48 72.9
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.2e-07 63.5 37 75.7
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 3.5e-07 62.0 37 73.0
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 2.3e-06 59.3 42 66.7
Lsat_1_v5_gn_5_105340 Lactuca sativa HOM05D006302 ORTHO05D007960 3.0e-06 58.9 68 42.6


User provided reference genes

Program Settings