Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 2.0e-83 312.4 158 100.0
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 2.7e-43 179.1 160 60.6
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 3.2e-41 172.2 164 57.3
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 1.2e-40 170.2 161 59.0
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 2.1e-40 169.5 159 56.0
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 4.7e-40 168.3 159 59.1
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 8.0e-40 167.5 159 55.3
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 1.0e-39 167.2 159 56.0
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.0e-39 167.2 159 56.6
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.8e-39 166.4 159 58.5
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.8e-39 166.4 157 57.3
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 2.3e-39 166.0 159 57.2
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 2.3e-39 166.0 162 56.8
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 3.0e-39 165.6 160 60.0
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 6.8e-39 164.5 159 55.3
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 8.8e-39 164.1 159 54.7
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.2e-38 163.7 159 56.0
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 2.6e-38 162.5 159 55.3
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 4.4e-38 161.8 159 55.3
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 4.4e-38 161.8 159 55.3
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 7.5e-38 161.0 159 55.3
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 9.8e-38 160.6 159 55.3
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 9.8e-38 160.6 159 55.3
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 9.8e-38 160.6 161 54.7
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 1.7e-37 159.8 158 57.0
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.7e-37 159.8 158 58.9
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.7e-37 159.8 160 55.0
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 2.8e-37 159.1 159 56.6
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.7e-37 158.7 158 55.7
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 3.7e-37 158.7 159 56.6
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 4.9e-37 158.3 159 55.3
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 6.3e-37 157.9 159 54.1
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 8.3e-37 157.5 158 56.3
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 8.3e-37 157.5 159 56.6
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 8.3e-37 157.5 158 57.0
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.1e-36 157.1 159 54.1
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.8e-36 156.4 158 53.8
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 2.4e-36 156.0 158 57.0
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 3.1e-36 155.6 158 55.1
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 5.4e-36 154.8 160 53.1
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 5.4e-36 154.8 158 57.6
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 5.4e-36 154.8 159 52.2
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 7.0e-36 154.5 162 53.7
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 7.0e-36 154.5 158 57.0
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 7.0e-36 154.5 159 53.5
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.2e-35 153.7 157 57.3
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 1.6e-35 153.3 148 58.1
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 2.0e-35 152.9 158 53.8
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.5e-35 152.1 166 51.2
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 4.5e-35 151.8 148 58.8
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.0e-34 150.6 159 52.2
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.9e-34 149.1 159 50.9
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 3.8e-34 148.7 163 52.1
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 5.0e-34 148.3 165 53.9
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 5.0e-34 148.3 147 57.1
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 8.6e-34 147.5 164 51.8
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.5e-33 146.7 159 50.9
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 2.5e-33 146.0 159 52.2
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 4.3e-33 145.2 158 53.8
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 7.3e-33 144.4 163 51.5
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.2e-32 143.7 158 52.5
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.2e-32 143.7 162 49.4
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 1.6e-32 143.3 153 54.2
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 1.6e-32 143.3 87 75.9
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 2.8e-32 142.5 158 51.3
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.8e-32 142.5 159 51.6
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 2.8e-32 142.5 87 78.2
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 8.0e-32 141.0 128 58.6
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.0e-31 140.6 159 50.3
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.4e-31 140.2 159 51.6
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 1.4e-31 140.2 159 51.6
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 1.8e-31 139.8 161 50.9
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 2.3e-31 139.4 105 70.5
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 4.0e-31 138.7 159 50.3
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 5.2e-31 138.3 161 51.6
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 8.9e-31 137.5 165 50.3
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.5e-30 136.7 160 48.1
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 1.5e-30 136.7 157 53.5
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.4e-30 135.6 162 50.6
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 3.4e-30 135.6 145 55.9
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 4.4e-30 135.2 142 56.3
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.4e-30 135.2 172 46.5
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 5.7e-30 134.8 171 45.6
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 5.7e-30 134.8 158 48.1
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 7.5e-30 134.4 159 49.7
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 7.5e-30 134.4 159 49.7
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 7.5e-30 134.4 159 49.7
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 7.5e-30 134.4 161 49.7
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 9.8e-30 134.0 171 46.8
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.3e-29 133.7 145 53.1
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.7e-29 133.3 137 56.2
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 2.9e-29 132.5 158 51.9
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 4.9e-29 131.7 171 48.0
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 6.4e-29 131.3 172 45.9
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 8.3e-29 131.0 166 48.8
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.4e-28 130.2 162 49.4
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 2.4e-28 129.4 159 47.2
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 2.4e-28 129.4 173 45.7
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 3.2e-28 129.0 160 48.1
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.2e-28 129.0 159 48.4
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 3.2e-28 129.0 142 52.1
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 7.0e-28 127.9 86 72.1
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.6e-27 126.7 93 71.0
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.6e-27 126.7 93 71.0
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 8.6e-26 120.9 159 45.9
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 8.6e-26 120.9 159 45.9
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 8.6e-26 120.9 89 65.2
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.5e-25 119.4 75 72.0
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 2.5e-25 119.4 73 78.1
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.8e-24 115.9 73 69.9
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 3.6e-24 115.5 72 70.8
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 8.9e-23 110.9 163 44.2
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 7.5e-22 107.8 118 48.3
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 2.9e-21 105.9 74 64.9
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 8.3e-21 104.4 87 57.5
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.1e-20 104.0 158 42.4
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 7.0e-20 101.3 85 56.5
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 6.0e-19 98.2 74 62.2
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.3e-18 97.1 85 57.6
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 2.3e-18 96.3 90 55.6
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.9e-18 95.5 158 39.2
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 1.1e-17 94.0 73 60.3
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.6e-16 90.1 154 40.3
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 5.2e-15 85.1 78 52.6
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 2.0e-14 83.2 86 55.8
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.8e-14 80.9 44 81.8
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 2.5e-09 66.2 159 34.6
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 4.3e-09 65.5 74 43.2
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 8.9e-07 57.8 74 41.9
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 1.5e-06 57.0 37 64.9
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 5.8e-06 55.1 31 74.2
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 7.6e-06 54.7 77 35.1


User provided reference genes

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