Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 0.0e+00 1093.2 564 100.0
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 4.4e-197 691.8 536 67.5
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.9e-192 676.4 562 63.2
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 4.7e-191 671.8 537 64.8
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 8.8e-190 667.5 563 63.9
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 9.7e-189 664.1 563 63.8
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 3.7e-188 662.1 563 63.4
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 2.5e-184 649.4 565 60.9
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 7.2e-184 647.9 564 61.5
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 8.0e-183 644.4 551 62.8
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 1.7e-177 626.7 566 60.6
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 1.5e-176 623.6 545 63.3
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.6e-175 620.2 546 61.7
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 4.4e-173 612.1 566 59.5
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 5.7e-173 611.7 540 62.0
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 2.8e-172 609.4 601 56.1
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.1e-171 607.4 552 60.1
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 8.6e-169 597.8 564 58.0
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.1e-168 597.4 510 63.5
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 2.8e-167 592.8 539 59.2
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.0e-166 590.9 549 59.4
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 4.0e-166 589.0 545 59.3
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 4.4e-165 585.5 557 58.5
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 7.5e-165 584.7 450 67.3
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 1.7e-164 583.6 559 58.5
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 1.1e-163 580.9 539 58.6
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 2.4e-163 579.7 541 57.9
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 7.0e-163 578.2 550 58.5
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 2.0e-162 576.6 558 58.1
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 7.8e-162 574.7 565 58.8
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 5.0e-161 572.0 544 58.1
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.5e-160 570.5 545 57.4
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 2.8e-159 566.2 693 48.9
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 3.6e-159 565.8 543 57.1
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 2.3e-158 563.1 544 55.9
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.3e-158 563.1 538 58.2
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.0e-158 562.4 543 57.1
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 3.4e-157 559.3 545 57.8
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 4.4e-157 558.9 543 55.2
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 9.8e-157 557.8 541 56.6
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.3e-156 557.4 542 56.5
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 3.7e-156 555.8 543 55.1
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 6.4e-156 555.1 547 55.8
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 6.4e-156 555.1 548 55.1
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 6.4e-156 555.1 553 56.1
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.1e-155 552.4 542 56.3
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.6e-154 550.4 542 56.1
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 1.7e-153 547.0 536 56.7
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 3.0e-153 546.2 542 55.0
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 3.9e-153 545.8 528 57.0
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 3.9e-153 545.8 556 55.6
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 4.3e-152 542.3 532 56.2
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 5.6e-152 542.0 553 54.4
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 9.5e-152 541.2 551 53.7
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 2.1e-151 540.0 553 53.5
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 1.1e-150 537.7 543 55.4
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.0e-150 535.8 543 55.1
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 1.3e-148 530.8 543 55.8
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 3.7e-148 529.3 543 54.7
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 2.4e-147 526.6 551 53.2
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 7.0e-147 525.0 543 54.5
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 9.2e-147 524.6 470 58.9
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 4.6e-146 522.3 546 54.8
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 5.0e-145 518.8 541 52.9
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 1.6e-143 513.8 578 50.7
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 6.8e-142 508.4 543 54.1
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 1.3e-140 504.2 541 52.7
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 1.3e-140 504.2 538 53.5
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 2.4e-139 500.0 544 51.7
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 4.6e-138 495.7 537 52.3
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.0e-137 493.0 489 54.0
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 3.0e-137 493.0 541 52.3
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 5.1e-137 492.3 544 52.4
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 4.3e-136 489.2 537 51.4
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 2.8e-135 486.5 547 52.8
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.8e-134 483.8 485 55.1
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 2.6e-133 479.9 537 51.2
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 3.4e-133 479.6 537 50.5
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 2.2e-132 476.9 537 50.5
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 4.6e-130 469.2 537 50.1
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.0e-129 468.0 390 62.1
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.7e-129 467.2 538 50.2
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 5.1e-129 465.7 538 50.0
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 5.1e-129 465.7 538 50.6
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 6.6e-129 465.3 537 49.2
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.5e-128 464.2 537 49.5
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 5.6e-128 462.2 537 49.3
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 5.6e-128 462.2 536 49.3
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.1e-127 460.3 470 54.0
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 6.2e-127 458.8 536 48.5
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 8.1e-127 458.4 584 48.3
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 5.3e-126 455.7 526 51.1
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.7e-121 440.7 478 52.3
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 6.6e-121 438.7 547 46.3
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 1.1e-120 438.0 388 61.3
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 2.4e-118 430.3 352 61.9
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 5.6e-112 409.1 365 60.3
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 2.1e-106 390.6 536 45.7
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 9.0e-102 375.2 325 61.5
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.3e-96 356.3 378 54.8
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 9.7e-96 355.1 499 42.3
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 1.8e-89 334.3 510 41.6
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.5e-88 330.5 383 48.3
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 3.1e-86 323.6 515 40.6
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 5.9e-85 319.3 575 39.1
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.5e-83 313.9 281 59.4
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 2.6e-80 303.9 327 53.2
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 3.5e-77 293.5 436 39.4
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 7.4e-72 275.8 452 38.1
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 7.4e-72 275.8 366 46.4
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 6.3e-71 272.7 201 64.7
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.4e-70 271.6 279 55.2
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 8.5e-68 262.3 278 53.2
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 1.6e-66 258.1 263 51.0
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 1.8e-62 244.6 410 39.5
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 9.1e-62 242.3 166 69.9
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.2e-58 231.9 263 53.2
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.8e-57 228.0 158 73.4
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.8e-55 220.7 196 57.1
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 4.2e-51 206.8 274 44.5
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 1.8e-49 201.4 155 65.8
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 3.6e-42 177.2 213 48.8
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.7e-39 167.2 161 58.4
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 8.3e-39 166.0 123 70.7
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 3.6e-34 150.6 242 42.1
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 1.1e-30 139.0 118 61.9
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 4.1e-30 137.1 137 55.5
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.3e-28 131.3 233 38.6
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.0e-28 131.0 230 38.3
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 5.2e-17 93.6 102 50.0
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 8.4e-15 86.3 102 47.1
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 7.8e-13 79.7 187 34.8
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 4.3e-11 73.9 96 47.9
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 6.9e-09 66.6 94 46.8
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 6.9e-09 66.6 94 46.8
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 2.0e-08 65.1 81 45.7
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 5.4e-06 57.0 152 33.6


User provided reference genes

Program Settings