Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g08620 Coffea canephora HOM05D000361 ORTHO05D004243 2.7e-115 418.7 212 100.0
Cc02_g26000 Coffea canephora HOM05D000361 ORTHO05D004243 1.3e-114 416.4 212 99.5
Cc02_g33820 Coffea canephora HOM05D000361 ORTHO05D004243 7.6e-102 374.0 232 85.8
Cc01_g21390 Coffea canephora HOM05D000361 ORTHO05D004243 1.2e-94 350.1 202 90.1
Cc11_g04100 Coffea canephora HOM05D000361 ORTHO05D004243 6.0e-91 337.8 189 92.6
Cc05_g04720 Coffea canephora HOM05D000361 ORTHO05D004243 2.6e-86 322.4 191 90.1
Nitab4.5_0006144g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 8.4e-77 290.8 202 73.8
Peaxi162Scf00058g02630 Petunia axillaris HOM05D000361 ORTHO05D004243 9.3e-76 287.3 202 72.8
Nitab4.5_0000363g0270 Nicotiana tabacum HOM05D000361 ORTHO05D004243 2.7e-75 285.8 202 73.8
GSVIVG01028119001 Vitis vinifera HOM05D000361 ORTHO05D004243 1.1e-73 280.4 202 73.3
Dinv33114 Davidia involucrata HOM05D000361 ORTHO05D004243 1.9e-73 279.6 202 73.3
Hma1.2p1_0486F.1_g163260 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 1.9e-73 279.6 202 71.8
Rhsim01G0290600 Rhododendron simsii HOM05D000361 ORTHO05D004243 9.6e-73 277.3 202 71.8
Thecc.01G313200 Theobroma cacao HOM05D000361 ORTHO05D004243 1.6e-72 276.6 202 69.8
Actinidia20995 Actinidia chinensis HOM05D000361 ORTHO05D004243 6.2e-72 274.6 202 71.8
Actinidia25847 Actinidia chinensis HOM05D000361 ORTHO05D004243 6.2e-72 274.6 214 69.6
CAN.G1280.26 Capsicum annuum HOM05D000361 ORTHO05D004243 6.2e-72 274.6 202 69.3
Solyc06g009650.3 Solanum lycopersicum HOM05D000361 ORTHO05D004243 1.1e-71 273.9 210 67.6
Sopen06g004290 Solanum pennellii HOM05D000361 ORTHO05D004243 2.4e-71 272.7 202 69.3
Duzib138G1700 Durio zibethinus HOM05D000361 ORTHO05D004243 4.0e-71 271.9 209 69.9
Duzib133G0716 Durio zibethinus HOM05D000361 ORTHO05D004243 9.0e-71 270.8 202 69.3
MD03G1295300 Malus domestica HOM05D000361 ORTHO05D004243 9.0e-71 270.8 202 68.8
Nn4g25601 Nelumbo nucifera HOM05D000361 ORTHO05D004243 1.2e-70 270.4 197 70.6
Prupe.5G007800 Prunus persica HOM05D000361 ORTHO05D004243 1.2e-70 270.4 202 68.8
Cpa.g.sc18.42 Carica papaya HOM05D000361 ORTHO05D004243 2.0e-70 269.6 202 68.8
Gohir.D12G128800 Gossypium hirsutum HOM05D000361 ORTHO05D004243 2.6e-70 269.2 209 68.9
Gorai.008G139800 Gossypium raimondii HOM05D000361 ORTHO05D004243 2.6e-70 269.2 209 68.9
PGR119G2139 Punica granatum HOM05D000361 ORTHO05D004243 4.5e-70 268.5 200 70.0
Gohir.A12G125100 Gossypium hirsutum HOM05D000361 ORTHO05D004243 5.8e-70 268.1 209 68.4
Atru.chr5.1003 Acer truncatum HOM05D000361 ORTHO05D004243 7.6e-70 267.7 202 66.8
CSS0010179 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 7.6e-70 267.7 202 70.3
CSS0030911 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 7.6e-70 267.7 202 70.3
MSTRG.21685 Avicennia marina HOM05D000361 ORTHO05D004243 1.0e-69 267.3 202 69.3
ATR0796G177 Amborella trichopoda HOM05D000361 ORTHO05D004243 2.2e-69 266.2 210 65.2
MELO3C023707.2 Cucumis melo HOM05D000361 ORTHO05D004243 3.8e-69 265.4 202 68.3
CsaV3_7G025080 Cucumis sativus L. HOM05D000361 ORTHO05D004243 4.9e-69 265.0 202 67.8
CSS0012467 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 6.5e-69 264.6 203 70.0
vmacro15111 Vaccinium macrocarpon HOM05D000361 ORTHO05D004243 6.5e-69 264.6 211 67.8
Sed0012026 Sechium edule HOM05D000361 ORTHO05D004243 4.2e-68 261.9 201 67.2
Ciclev10018936m.g Citrus clementina HOM05D000361 ORTHO05D004243 5.5e-68 261.5 190 69.5
Sopen01g031260 Solanum pennellii HOM05D000361 ORTHO05D004243 1.2e-67 260.4 210 66.7
Eucgr.H00929 Eucalyptus grandis HOM05D000361 ORTHO05D004243 1.6e-67 260.0 219 63.9
Solyc01g079490.2 Solanum lycopersicum HOM05D000361 ORTHO05D004243 1.6e-67 260.0 210 66.7
TWI36G0074 Tripterygium wilfordii HOM05D000361 ORTHO05D004243 2.1e-67 259.6 211 64.0
PSO017G2448 Papaver somniferum HOM05D000361 ORTHO05D004243 6.0e-67 258.1 197 68.5
Cc03_g12210 Coffea canephora HOM05D000361 ORTHO05D004243 7.9e-67 257.7 134 96.3
Gohir.A11G109900 Gossypium hirsutum HOM05D000361 ORTHO05D004243 7.9e-67 257.7 219 62.1
PSO063G6259 Papaver somniferum HOM05D000361 ORTHO05D004243 2.3e-66 256.1 197 68.0
Gorai.007G122900 Gossypium raimondii HOM05D000361 ORTHO05D004243 3.0e-66 255.8 219 61.6
Aqoxy3G01218 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 3.9e-66 255.4 202 66.3
Ciclev10010795m.g Citrus clementina HOM05D000361 ORTHO05D004243 6.7e-66 254.6 202 64.4
Gohir.D11G114600 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.5e-65 253.4 219 61.6
Manes.01G227700 Manihot esculenta HOM05D000361 ORTHO05D004243 1.5e-65 253.4 202 64.4
Potri.002G196300 Populus trichocarpa HOM05D000361 ORTHO05D004243 1.5e-65 253.4 202 65.8
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 1.9e-65 253.1 202 65.3
Aqoxy3G02976 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 3.3e-65 252.3 197 68.0
CiPaw.07G117400 Carya illinoinensis HOM05D000361 ORTHO05D004243 4.3e-65 251.9 201 65.7
Potri.014G120900 Populus trichocarpa HOM05D000361 ORTHO05D004243 9.6e-65 250.8 202 65.8
Manes.05G003200 Manihot esculenta HOM05D000361 ORTHO05D004243 1.3e-64 250.4 204 63.7
QL12p019966 Quercus lobata HOM05D000361 ORTHO05D004243 2.1e-64 249.6 205 64.9
Haze_05039 Corylus avellana HOM05D000361 ORTHO05D004243 3.7e-64 248.8 208 63.9
CANSAT25G2078 Cannabis sativa HOM05D000361 ORTHO05D004243 1.4e-63 246.9 185 69.2
arahy.Tifrunner.gnm1.ann1.G7NAMC Arachis hypogaea HOM05D000361 ORTHO05D004243 1.8e-63 246.5 207 62.8
Ca_10285_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 4.1e-63 245.4 209 61.2
VMungo0720G0598 Vigna mungo HOM05D000361 ORTHO05D004243 4.1e-63 245.4 202 63.4
Glyma.10G013400 Glycine max HOM05D000361 ORTHO05D004243 5.3e-63 245.0 202 62.9
DCAR_012354 Daucus carota HOM05D000361 ORTHO05D004243 6.9e-63 244.6 217 63.6
Medtr1g087100 Medicago truncatula HOM05D000361 ORTHO05D004243 9.0e-63 244.2 209 62.2
Psat6g161800 Pisum sativum HOM05D000361 ORTHO05D004243 9.0e-63 244.2 209 62.2
Phvul.007G214400 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 1.5e-62 243.4 202 63.4
Glyma.02G012800 Glycine max HOM05D000361 ORTHO05D004243 2.0e-62 243.0 202 61.9
TPR.G19758 Trifolium pratense HOM05D000361 ORTHO05D004243 2.6e-62 242.7 209 61.7
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 4.5e-62 241.9 209 60.8
Ah.10g031040 Amaranthus hybridus HOM05D000361 ORTHO05D004243 1.3e-61 240.4 205 62.9
COL.COLO4_23233 Corchorus olitorius HOM05D000361 ORTHO05D004243 1.7e-61 240.0 202 62.4
FvH4_5g39210 Fragaria vesca HOM05D000361 ORTHO05D004243 1.7e-61 240.0 197 64.5
Carub.0006s3520 Capsella rubella HOM05D000361 ORTHO05D004243 3.8e-61 238.8 211 59.2
AUR62011807 Chenopodium quinoa HOM05D000361 ORTHO05D004243 3.8e-61 238.8 222 58.6
Thhalv10028443m.g Eutrema salsugineum HOM05D000361 ORTHO05D004243 3.8e-61 238.8 204 61.3
Hund09630 Selenicereus undatus HOM05D000361 ORTHO05D004243 3.8e-61 238.8 203 63.5
CARHR249640 Cardamine hirsuta HOM05D000361 ORTHO05D004243 6.5e-61 238.0 211 58.3
Sp6g01910 Schrenkiella parvula HOM05D000361 ORTHO05D004243 6.5e-61 238.0 204 61.3
AUR62024653 Chenopodium quinoa HOM05D000361 ORTHO05D004243 3.2e-60 235.7 205 60.5
Nitab4.5_0001301g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 3.2e-60 235.7 203 63.1
SGA_v2.0_scaffold36G14324 Striga asiatica HOM05D000361 ORTHO05D004243 7.2e-60 234.6 202 62.4
Nitab4.5_0011075g0020 Nicotiana tabacum HOM05D000361 ORTHO05D004243 9.3e-60 234.2 210 60.5
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 9.3e-60 234.2 202 60.9
CDE11G0331 Ceratophyllum demersum HOM05D000361 ORTHO05D004243 1.2e-59 233.8 185 65.4
RcHm_v2.0_Chr7g0241471 Rosa chinensis HOM05D000361 ORTHO05D004243 1.6e-59 233.4 202 61.9
arahy.Tifrunner.gnm1.ann1.N0EKR1 Arachis hypogaea HOM05D000361 ORTHO05D004243 2.1e-59 233.0 241 53.9
AL6G51220 Arabidopsis lyrata HOM05D000361 ORTHO05D004243 7.9e-59 231.1 220 56.4
AT4G02030 Arabidopsis thaliana HOM05D000361 ORTHO05D004243 7.9e-59 231.1 201 59.7
Oeu008471.2 Olea europaea HOM05D000361 ORTHO05D004243 1.0e-58 230.7 202 63.4
ClCG10G006350 Citrullus lanatus HOM05D000361 ORTHO05D004243 3.9e-58 228.8 202 60.9
Lalb_Chr06g0166851 Lupinus albus HOM05D000361 ORTHO05D004243 5.1e-58 228.4 211 61.6
ClCG07G000710 Citrullus lanatus HOM05D000361 ORTHO05D004243 8.7e-58 227.6 202 61.4
THA.LOC104799236 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 8.7e-58 227.6 205 61.5
Peaxi162Scf00691g00222 Petunia axillaris HOM05D000361 ORTHO05D004243 2.5e-57 226.1 202 61.4
THA.LOC104801306 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 2.5e-57 226.1 205 61.0
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 1.3e-56 223.8 202 61.4
EL10As5g23529 Beta vulgaris HOM05D000361 ORTHO05D004243 1.6e-56 223.4 205 60.5
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 1.6e-56 223.4 198 62.1
HanXRQChr15g0464131 Helianthus annuus HOM05D000361 ORTHO05D004243 1.4e-55 220.3 208 61.1
Aa31LG5G1680 Aethionema arabicum HOM05D000361 ORTHO05D004243 1.5e-54 216.9 217 55.3
Aqoxy328s001 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 2.0e-54 216.5 200 59.0
Sabra02G0160700 Salix brachista HOM05D000361 ORTHO05D004243 4.5e-54 215.3 203 58.6
Lj1g0012423 Lotus japonicus HOM05D000361 ORTHO05D004243 1.0e-53 214.2 213 54.0
A09p01480 Brassica napus HOM05D000361 ORTHO05D004243 1.3e-53 213.8 204 57.4
Migut.N00925 Erythranthe guttata HOM05D000361 ORTHO05D004243 1.7e-53 213.4 200 59.5
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 1.7e-53 213.4 197 59.9
BcaC04g24028 Brassica carinata HOM05D000361 ORTHO05D004243 5.0e-53 211.8 204 56.9
C09p01600 Brassica napus HOM05D000361 ORTHO05D004243 5.0e-53 211.8 204 56.9
BcaB01g02087 Brassica carinata HOM05D000361 ORTHO05D004243 3.2e-52 209.1 204 56.9
BraA09t35809Z Brassica rapa HOM05D000361 ORTHO05D004243 2.1e-51 206.5 187 60.4
SalBow2G3626 Salvia bowleyana HOM05D000361 ORTHO05D004243 3.6e-51 205.7 157 68.2
HPP92_004593 Vanilla planifolia HOM05D000361 ORTHO05D004243 6.1e-51 204.9 198 55.1
BolC9t53093H Brassica oleracea HOM05D000361 ORTHO05D004243 7.9e-51 204.5 187 59.9
Cc00_g34370 Coffea canephora HOM05D000361 ORTHO05D004243 1.1e-49 200.7 114 88.6
Psat3g020160 Pisum sativum HOM05D000361 ORTHO05D004243 7.4e-49 198.0 223 53.8
FAN18G4464 Fragaria x ananassa HOM05D000361 ORTHO05D004243 9.7e-49 197.6 203 54.7
arahy.Tifrunner.gnm1.ann1.KULZ0F Arachis hypogaea HOM05D000361 ORTHO05D004243 2.8e-48 196.1 204 55.4
FAN04G1824 Fragaria x ananassa HOM05D000361 ORTHO05D004243 8.2e-48 194.5 214 55.6
unitig_736.g22938 Utricularia gibba HOM05D000361 ORTHO05D004243 5.3e-47 191.8 187 58.3
Oeu041216.1 Olea europaea HOM05D000361 ORTHO05D004243 1.2e-46 190.7 157 65.6
arahy.Tifrunner.gnm1.ann1.66RZQ8 Arachis hypogaea HOM05D000361 ORTHO05D004243 1.3e-45 187.2 210 52.9
AagrBONN_evm.TU.Sc2ySwM_228.3730 Anthoceros agrestis HOM05D000361 ORTHO05D004243 6.1e-43 178.3 181 51.9
VMungo1383G3239 Vigna mungo HOM05D000361 ORTHO05D004243 7.9e-43 177.9 170 56.5
TPR.G4118 Trifolium pratense HOM05D000361 ORTHO05D004243 1.1e-41 174.1 203 48.8
Cc00_g34360 Coffea canephora HOM05D000361 ORTHO05D004243 1.7e-40 170.2 84 100.0
Sc05g0000420 Simmondsia chinensis HOM05D000361 ORTHO05D004243 1.2e-38 164.1 125 62.4
Pp3c12_23510 Physcomitrium patens HOM05D000361 ORTHO05D004243 7.7e-38 161.4 188 45.7
Lj2A1205T44 Lonicera japonica HOM05D000361 ORTHO05D004243 3.2e-36 156.0 258 43.0
Zm00001eb056500 Zea mays HOM05D000361 ORTHO05D004243 3.2e-36 156.0 202 46.0
Mapoly0167s0022 Marchantia polymorpha HOM05D000361 ORTHO05D004243 7.2e-36 154.8 189 45.5
Lsat_1_v5_gn_1_35460 Lactuca sativa HOM05D000361 ORTHO05D004243 9.4e-36 154.5 194 51.0
SMO116G0335 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 1.0e-34 151.0 202 45.0
SMO195G0031 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 1.0e-34 151.0 202 45.0
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 4.0e-34 149.1 156 54.5
Lalb_Chr15g0078161 Lupinus albus HOM05D000361 ORTHO05D004243 7.0e-31 138.3 132 53.0
Pp3c3_36800 Physcomitrium patens HOM05D000361 ORTHO05D004243 4.5e-30 135.6 188 40.4
DCAR_005760 Daucus carota HOM05D000361 ORTHO05D004243 1.6e-27 127.1 115 58.3
CBR_g48220 Chara braunii HOM05D000361 ORTHO05D004243 4.4e-25 119.0 235 33.6
Oeu049914.1 Olea europaea HOM05D000361 ORTHO05D004243 7.0e-23 111.7 117 51.3
COL.COLO4_26725 Corchorus olitorius HOM05D000361 ORTHO05D004243 3.8e-21 105.9 96 52.1
BcaC04g24029 Brassica carinata HOM05D000361 ORTHO05D004243 5.2e-18 95.5 113 50.4
Phvul.001G212700 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 2.2e-16 90.1 83 53.0
Actinidia04687 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.4e-15 87.4 101 50.5
Actinidia27762 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.4e-15 87.4 101 50.5
SEGI_09541 Sequoiadendron giganteum HOM05D000361 ORTHO05D004243 9.2e-15 84.7 71 63.4
Lalb_Chr15g0078171 Lupinus albus HOM05D000361 ORTHO05D004243 1.2e-14 84.3 76 61.8
Glyma.19G216151 Glycine max HOM05D000361 ORTHO05D004243 2.0e-14 83.6 88 55.7
Dinv10096 Davidia involucrata HOM05D000361 ORTHO05D004243 5.9e-14 82.0 55 74.5
Actinidia04728 Actinidia chinensis HOM05D000361 ORTHO05D004243 4.7e-11 72.4 51 64.7
Dinv10097 Davidia involucrata HOM05D000361 ORTHO05D004243 4.0e-10 69.3 54 63.0
SHI15042 Sapria himalayana HOM05D000361 ORTHO05D004243 2.6e-09 66.6 80 50.0
Dinv10095 Davidia involucrata HOM05D000361 ORTHO05D004243 2.4e-07 60.1 36 83.3
Cre09.g404650 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D004243 1.6e-06 57.4 130 29.2
Lsat_1_v5_gn_0_31980 Lactuca sativa HOM05D000329 ORTHO05D000833 5.9e-06 55.5 43 69.8


User provided reference genes

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