Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.5e-182 642.9 367 100.0
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 2.0e-81 307.0 355 54.9
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 4.1e-79 299.3 372 53.5
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.7e-78 296.6 348 54.0
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 1.3e-77 294.3 368 52.2
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 2.2e-77 293.5 374 52.4
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 6.5e-77 292.0 360 52.5
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 8.0e-75 285.0 351 53.3
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 4.0e-74 282.7 352 52.0
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 2.0e-73 280.4 351 51.3
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 5.7e-73 278.9 351 50.7
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 1.3e-72 277.7 363 50.7
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 2.2e-72 276.9 351 51.6
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 6.3e-72 275.4 346 51.7
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 9.1e-71 271.6 351 53.0
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.7e-70 270.0 349 51.0
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 1.7e-69 267.3 355 52.7
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 2.3e-69 266.9 356 50.8
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 5.0e-69 265.8 354 50.3
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 6.5e-69 265.4 346 50.9
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 6.5e-69 265.4 358 52.0
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.2e-68 263.1 349 51.0
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 1.2e-67 261.2 355 50.4
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.7e-67 259.2 347 51.3
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 4.7e-67 259.2 347 51.3
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.8e-66 257.3 400 45.0
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 1.8e-66 257.3 345 51.3
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 6.8e-66 255.4 351 49.0
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 8.9e-66 255.0 347 50.7
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 5.7e-65 252.3 347 50.4
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.3e-64 251.1 353 49.6
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.7e-64 250.8 340 49.1
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 1.7e-64 250.8 348 47.4
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.7e-64 250.8 352 48.6
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.2e-64 250.4 356 45.2
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 2.8e-64 250.0 341 50.4
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 2.8e-64 250.0 348 50.3
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 4.9e-64 249.2 349 48.1
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 1.1e-63 248.1 351 48.4
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 1.1e-63 248.1 340 52.1
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 1.4e-63 247.7 352 48.0
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 1.8e-63 247.3 345 46.7
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 2.4e-63 246.9 328 50.9
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 4.1e-63 246.1 348 46.6
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 2.0e-62 243.8 343 49.0
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 2.0e-62 243.8 340 48.5
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 2.7e-62 243.4 300 52.3
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 1.3e-61 241.1 354 44.4
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.7e-61 240.7 289 49.8
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 1.7e-61 240.7 358 46.4
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 2.3e-61 240.4 352 47.2
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 5.0e-61 239.2 340 47.9
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 5.0e-61 239.2 303 49.8
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 6.6e-61 238.8 351 44.7
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.2e-59 234.6 356 46.3
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 6.1e-59 232.3 316 47.2
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 3.0e-58 229.9 346 49.1
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 3.0e-58 229.9 366 45.6
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 4.0e-58 229.6 366 46.7
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 8.9e-58 228.4 354 45.5
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 1.2e-57 228.0 344 45.3
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-57 228.0 351 44.4
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 3.4e-57 226.5 347 45.8
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 5.7e-57 225.7 346 46.2
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 7.5e-57 225.3 311 46.9
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 2.9e-56 223.4 362 44.8
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 6.4e-56 222.2 447 39.1
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 8.3e-56 221.9 352 45.5
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.1e-55 221.5 360 47.5
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 7.0e-55 218.8 341 43.4
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 9.2e-55 218.4 519 36.2
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.7e-54 216.9 321 46.4
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 1.0e-53 214.9 353 43.9
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 2.3e-53 213.8 350 44.6
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 6.6e-53 212.2 340 46.2
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.5e-52 211.1 340 47.4
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 2.8e-51 206.8 370 45.4
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 4.7e-51 206.1 288 48.6
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 6.2e-51 205.7 299 44.5
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.4e-50 204.5 297 48.5
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 6.8e-50 202.2 308 43.5
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 8.9e-50 201.8 288 46.2
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 8.9e-50 201.8 340 42.4
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 8.9e-50 201.8 286 47.2
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.5e-49 201.1 357 40.9
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 2.0e-49 200.7 297 46.1
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 5.8e-49 199.1 340 41.5
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 6.4e-48 195.7 349 40.4
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 6.4e-48 195.7 323 45.5
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 8.3e-48 195.3 345 41.7
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 2.4e-47 193.7 345 41.4
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 9.2e-47 191.8 348 39.9
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.2e-46 191.4 345 41.2
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 2.0e-46 190.7 260 49.2
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 6.0e-46 189.1 236 51.3
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 7.8e-46 188.7 289 44.6
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 1.3e-45 188.0 344 40.4
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.1e-44 184.9 349 41.5
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 1.5e-44 184.5 291 45.4
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.2e-43 181.4 250 50.8
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 1.2e-43 181.4 349 41.3
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.6e-43 181.0 356 37.4
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 2.8e-43 180.3 368 42.9
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 1.1e-42 178.3 286 46.5
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 3.1e-42 176.8 308 38.6
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 5.2e-42 176.0 269 45.7
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 6.8e-42 175.6 262 48.5
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 8.9e-42 175.3 283 43.1
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.2e-41 174.9 289 42.9
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 1.5e-41 174.5 349 41.0
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 2.0e-41 174.1 368 42.4
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 2.0e-41 174.1 304 40.1
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 2.6e-41 173.7 344 43.0
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 3.4e-41 173.3 359 36.8
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.1e-39 168.3 353 42.5
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 4.1e-39 166.4 240 49.6
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.2e-38 164.9 313 37.4
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 7.8e-38 162.2 296 39.9
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 2.1e-35 154.1 340 40.6
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.1e-34 151.8 296 34.8
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 1.8e-34 151.0 281 40.9
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 2.4e-34 150.6 285 37.9
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 1.5e-33 147.9 293 36.9
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.7e-29 134.4 129 61.2
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 5.1e-29 132.9 260 36.9
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.6e-27 127.9 237 43.9
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.0e-26 123.2 294 37.8
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 2.6e-25 120.6 297 37.4
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 5.4e-23 112.8 127 55.1
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.7e-21 107.8 162 44.4
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.5e-20 104.8 198 38.4
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 3.3e-20 103.6 292 29.8
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.3e-19 101.7 92 59.8
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 3.1e-18 97.1 89 59.6
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 8.4e-16 89.0 110 50.0
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 3.2e-15 87.0 111 51.4
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.2e-14 85.1 288 30.9
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 1.2e-14 85.1 260 30.8
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 4.6e-14 83.2 342 26.6
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 5.6e-12 76.3 105 47.6
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 7.4e-12 75.9 66 62.1
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 1.4e-10 71.6 81 44.4
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 2.0e-09 67.8 67 52.2
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 2.6e-09 67.4 117 39.3
AagrBONN_evm.TU.Sc2ySwM_368.1809 Anthoceros agrestis HOM05D025852 ORTHO05D031190 4.2e-07 60.1 368 23.1
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 5.5e-07 59.7 98 39.8
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 2.1e-06 57.8 113 35.4
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 6.0e-06 56.2 110 35.5


User provided reference genes

Program Settings