Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g07860 Coffea canephora HOM05D006386 ORTHO05D007575 2.7e-119 432.2 245 100.0
CSS0007083 Camellia sinensis var. sinensis HOM05D006386 ORTHO05D007575 1.4e-70 270.4 238 57.1
Dinv36853 Davidia involucrata HOM05D006386 ORTHO05D007575 5.7e-69 265.0 241 58.1
PGSC0003DMG400024511 Solanum tuberosum HOM05D006386 ORTHO05D007575 2.2e-68 263.1 243 51.9
Actinidia36923 Actinidia chinensis HOM05D006386 ORTHO05D007575 4.8e-68 261.9 241 55.2
Solyc03g114520.3 Solanum lycopersicum HOM05D006386 ORTHO05D007575 6.3e-68 261.5 243 52.3
Sopen03g033610 Solanum pennellii HOM05D006386 ORTHO05D007575 2.4e-67 259.6 243 52.3
GSVIVG01008195001 Vitis vinifera HOM05D006386 ORTHO05D007575 3.1e-67 259.2 238 55.5
Ciclev10021913m.g Citrus clementina HOM05D006386 ORTHO05D007575 1.3e-65 253.8 241 52.3
Atru.chr9.671 Acer truncatum HOM05D006386 ORTHO05D007575 2.2e-65 253.1 243 53.5
Duzib068G0691 Durio zibethinus HOM05D006386 ORTHO05D007575 5.0e-65 251.9 238 55.5
Nitab4.5_0000646g0180 Nicotiana tabacum HOM05D006386 ORTHO05D007575 5.0e-65 251.9 243 50.2
COL.COLO4_08656 Corchorus olitorius HOM05D006386 ORTHO05D007575 1.5e-64 250.4 241 53.5
Thecc.03G113300 Theobroma cacao HOM05D006386 ORTHO05D007575 4.2e-64 248.8 241 54.4
Lj9A435T83 Lonicera japonica HOM05D006386 ORTHO05D007575 5.5e-64 248.4 237 55.7
Nitab4.5_0004342g0080 Nicotiana tabacum HOM05D006386 ORTHO05D007575 8.8e-62 241.1 243 48.6
Oeu010193.1 Olea europaea HOM05D006386 ORTHO05D007575 9.8e-61 237.7 241 53.1
Gohir.D11G038000 Gossypium hirsutum HOM05D006386 ORTHO05D007575 1.7e-60 236.9 241 52.3
Gorai.007G040700 Gossypium raimondii HOM05D006386 ORTHO05D007575 1.7e-60 236.9 241 52.3
Nn3g17620 Nelumbo nucifera HOM05D006386 ORTHO05D007575 1.7e-60 236.9 242 51.7
TWI81G0025 Tripterygium wilfordii HOM05D006386 ORTHO05D007575 2.8e-60 236.1 241 51.9
MSTRG.4502 Avicennia marina HOM05D006386 ORTHO05D007575 3.7e-60 235.7 243 60.5
CANSAT80G2620 Cannabis sativa HOM05D006386 ORTHO05D007575 2.0e-58 229.9 241 50.2
QL10p021984 Quercus lobata HOM05D006386 ORTHO05D007575 2.0e-58 229.9 240 50.8
Migut.D01482 Erythranthe guttata HOM05D006386 ORTHO05D007575 4.5e-58 228.8 244 50.0
AUR62032161 Chenopodium quinoa HOM05D006386 ORTHO05D007575 5.9e-58 228.4 243 49.0
RcHm_v2.0_Chr7g0184161 Rosa chinensis HOM05D006386 ORTHO05D007575 5.9e-58 228.4 243 48.1
CiPaw.16G081700 Carya illinoinensis HOM05D006386 ORTHO05D007575 7.7e-58 228.0 241 49.8
Potri.015G055500 Populus trichocarpa HOM05D006386 ORTHO05D007575 1.3e-57 227.3 241 49.8
Cfa019518 Carpinus fangiana HOM05D006386 ORTHO05D007575 5.0e-57 225.3 241 50.2
SalBow1G4471 Salvia bowleyana HOM05D006386 ORTHO05D007575 6.5e-57 224.9 243 47.7
FvH4_5g13000 Fragaria vesca HOM05D006386 ORTHO05D007575 1.9e-56 223.4 243 48.1
FAN08G0928 Fragaria x ananassa HOM05D006386 ORTHO05D007575 3.2e-56 222.6 243 47.7
FAN13G1489 Fragaria x ananassa HOM05D006386 ORTHO05D007575 3.2e-56 222.6 243 48.1
FAN18G3466 Fragaria x ananassa HOM05D006386 ORTHO05D007575 5.5e-56 221.9 243 47.7
Hund02537 Selenicereus undatus HOM05D006386 ORTHO05D007575 7.2e-56 221.5 242 46.7
Sabra15G0080700 Salix brachista HOM05D006386 ORTHO05D007575 1.2e-55 220.7 267 46.4
TAR629G0047 Trochodendron aralioides HOM05D002187 ORTHO05D002243 1.6e-55 220.3 190 60.0
Gohir.A11G034600 Gossypium hirsutum HOM05D006386 ORTHO05D007575 2.1e-55 219.9 242 49.2
THA.LOC104819388 Tarenaya hassleriana HOM05D006386 ORTHO05D007575 1.0e-54 217.6 241 46.9
Eucgr.K02638 Eucalyptus grandis HOM05D006386 ORTHO05D007575 4.0e-54 215.7 241 47.3
SGA_v2.0_scaffold42G16024 Striga asiatica HOM05D006386 ORTHO05D007575 2.6e-53 213.0 268 45.1
Sed0015508 Sechium edule HOM05D006386 ORTHO05D007575 9.8e-53 211.1 243 47.3
Hma1.2p1_0340F.1_g130200 Hydrangea macrophylla HOM05D006386 ORTHO05D007575 2.8e-52 209.5 244 47.5
Manes.01G023400 Manihot esculenta HOM05D006386 ORTHO05D007575 2.8e-52 209.5 241 44.8
Lsat_1_v5_gn_4_112761 Lactuca sativa HOM05D006386 ORTHO05D007575 1.8e-51 206.8 245 47.8
EL10Ac9g20981 Beta vulgaris HOM05D006386 ORTHO05D007575 3.1e-51 206.1 244 45.5
HanXRQChr16g0502011 Helianthus annuus HOM05D006386 ORTHO05D007575 4.1e-51 205.7 241 46.9
Sc04g0004070 Simmondsia chinensis HOM05D006386 ORTHO05D007575 9.2e-51 204.5 252 46.4
vmacro17651 Vaccinium macrocarpon HOM05D006386 ORTHO05D007575 1.2e-50 204.1 178 57.3
Glyma.17G083800 Glycine max HOM05D006386 ORTHO05D007575 4.5e-50 202.2 243 44.9
Aa31LG4G9830 Aethionema arabicum HOM05D006386 ORTHO05D007575 5.0e-49 198.7 240 45.0
Lalb_Chr13g0302571 Lupinus albus HOM05D006386 ORTHO05D007575 6.6e-49 198.4 243 45.7
PGR044G0997 Punica granatum HOM05D006386 ORTHO05D007575 6.6e-49 198.4 241 46.9
ClCG06G015230 Citrullus lanatus HOM05D006386 ORTHO05D007575 1.9e-48 196.8 243 44.4
AL7G44320 Arabidopsis lyrata HOM05D006386 ORTHO05D007575 1.2e-47 194.1 238 43.3
CARHR217490 Cardamine hirsuta HOM05D006386 ORTHO05D007575 2.8e-47 193.0 239 43.5
Phvul.003G180600 Phaseolus vulgaris HOM05D006386 ORTHO05D007575 6.1e-47 191.8 243 43.6
Phvul.002G142200 Phaseolus vulgaris HOM05D006386 ORTHO05D007575 1.8e-46 190.3 243 42.8
VMungo1215G2864 Vigna mungo HOM05D006386 ORTHO05D007575 2.3e-46 189.9 243 42.8
Glyma.05G016300 Glycine max HOM05D006386 ORTHO05D007575 3.0e-46 189.5 236 43.6
Lsat_1_v5_gn_4_112801 Lactuca sativa HOM05D006386 ORTHO05D007575 4.0e-46 189.1 235 45.1
MD14G1218500 Malus domestica HOM05D006386 ORTHO05D007575 2.0e-45 186.8 238 42.9
Thhalv10003465m.g Eutrema salsugineum HOM05D006386 ORTHO05D007575 5.7e-45 185.3 243 42.4
PSO478G3500 Papaver somniferum HOM05D006386 ORTHO05D007575 5.7e-45 185.3 209 45.9
Peaxi162Scf00119g00118 Petunia axillaris HOM05D006386 ORTHO05D007575 5.7e-45 185.3 253 44.3
TPR.G23873 Trifolium pratense HOM05D006386 ORTHO05D007575 5.7e-45 185.3 246 44.3
Medtr4g112610 Medicago truncatula HOM05D006386 ORTHO05D007575 9.8e-45 184.5 245 43.3
PSO017G3209 Papaver somniferum HOM05D006386 ORTHO05D007575 9.8e-45 184.5 209 45.5
Ca_21735_v3 Cicer arietinum L. HOM05D006386 ORTHO05D007575 1.3e-44 184.1 240 42.1
ECA246G4419 Erigeron canadensis HOM05D006386 ORTHO05D007575 2.2e-44 183.3 243 42.8
AT5G35520 Arabidopsis thaliana HOM05D006386 ORTHO05D007575 2.9e-44 183.0 238 41.6
Lj6g0003397 Lotus japonicus HOM05D006386 ORTHO05D007575 6.4e-44 181.8 243 42.0
arahy.Tifrunner.gnm1.ann1.3Z7JIG Arachis hypogaea HOM05D006386 ORTHO05D007575 8.3e-44 181.4 238 43.3
Carub.0007s3127 Capsella rubella HOM05D006386 ORTHO05D007575 8.3e-44 181.4 241 40.2
Medtr4g112830 Medicago truncatula HOM05D006386 ORTHO05D007575 1.4e-43 180.6 248 43.1
arahy.Tifrunner.gnm1.ann1.HL5ANR Arachis hypogaea HOM05D006386 ORTHO05D007575 2.4e-43 179.9 238 42.4
ECA232G1078 Erigeron canadensis HOM05D006386 ORTHO05D007575 7.0e-43 178.3 243 44.4
Prupe.5G212600 Prunus persica HOM05D006386 ORTHO05D007575 1.2e-42 177.6 238 42.0
BcaB06g26945 Brassica carinata HOM05D006386 ORTHO05D007575 2.7e-42 176.4 243 41.6
Sp7g06840 Schrenkiella parvula HOM05D006386 ORTHO05D007575 1.0e-41 174.5 244 40.2
Actinidia33576 Actinidia chinensis HOM05D006386 ORTHO05D007575 2.3e-41 173.3 256 43.0
unitig_62.g23762 Utricularia gibba HOM05D006386 ORTHO05D007575 1.1e-40 171.0 220 41.4
arahy.Tifrunner.gnm1.ann1.X9R15Y Arachis hypogaea HOM05D006386 ORTHO05D007575 4.7e-39 165.6 253 39.5
CDE02G3865 Ceratophyllum demersum HOM05D006386 ORTHO05D007575 4.7e-39 165.6 210 41.9
Aqoxy6G00629 Aquilegia oxysepala HOM05D006386 ORTHO05D007575 6.2e-39 165.2 235 42.1
BcaC02g09476 Brassica carinata HOM05D006386 ORTHO05D007575 6.8e-38 161.8 245 40.0
C04p43230 Brassica napus HOM05D006386 ORTHO05D007575 6.8e-38 161.8 245 40.4
BolC4t25901H Brassica oleracea HOM05D006386 ORTHO05D007575 1.2e-37 161.0 245 40.0
ATR0730G046 Amborella trichopoda HOM05D006386 ORTHO05D007575 7.5e-37 158.3 243 37.9
MSTRG.4503 Avicennia marina HOM05D006386 ORTHO05D007575 8.3e-36 154.8 178 47.2
SHI18989 Sapria himalayana HOM05D006386 ORTHO05D007575 1.1e-35 154.5 179 45.8
A04p09730 Brassica napus HOM05D006386 ORTHO05D007575 2.3e-33 146.7 241 43.2
BraA04t16635Z Brassica rapa HOM05D006386 ORTHO05D007575 1.1e-32 144.4 243 43.2
CsaV3_1G003130 Cucumis sativus L. HOM05D006386 ORTHO05D007575 2.5e-32 143.3 241 40.7
MBI10_g16789_MAGBIO Magnolia biondii HOM05D006386 ORTHO05D007575 9.5e-32 141.4 174 43.7
Nitab4.5_0005402g0030 Nicotiana tabacum HOM05D002295 ORTHO05D007575 1.2e-31 141.0 236 36.0
HPP92_015441 Vanilla planifolia HOM05D006386 ORTHO05D007575 1.6e-31 140.6 244 37.3
Psat4g044400 Pisum sativum HOM05D006386 ORTHO05D007575 3.6e-31 139.4 241 37.8
Aqoxy3G00630 Aquilegia oxysepala HOM05D006386 ORTHO05D007575 4.0e-30 136.0 236 35.6
CAN.G982.14 Capsicum annuum HOM05D006386 ORTHO05D007575 3.7e-28 129.4 134 49.3
MD06G1208100 Malus domestica HOM05D006386 ORTHO05D007575 2.3e-25 120.2 178 41.0
Cpa.g.sc53.23 Carica papaya HOM05D006386 ORTHO05D007575 9.5e-24 114.8 76 72.4
Zm00001eb433940 Zea mays HOM05D006386 ORTHO05D007575 1.1e-22 111.3 202 34.2
arahy.Tifrunner.gnm1.ann1.7DA3AY Arachis hypogaea HOM05D006386 ORTHO05D007575 1.8e-22 110.5 243 32.5
Os02g0620100 Oryza sativa ssp. japonica HOM05D006386 ORTHO05D007575 1.5e-21 107.5 242 32.2
Zm00001eb065850 Zea mays HOM05D006386 ORTHO05D007575 2.1e-18 97.1 132 41.7
Actinidia27067 Actinidia chinensis HOM05D006386 ORTHO05D007575 1.3e-17 94.4 60 76.7
MELO3C028557.2 Cucumis melo HOM05D006386 ORTHO05D007575 1.5e-16 90.9 59 72.9
DCAR_029598 Daucus carota HOM05D006386 ORTHO05D007575 1.9e-16 90.5 141 37.6
Cpa.g.sc53.22 Carica papaya HOM05D006386 ORTHO05D007575 1.2e-15 87.8 141 37.6
AUR62036917 Chenopodium quinoa HOM05D006386 ORTHO05D007575 3.6e-15 86.3 141 34.8
TWI81G0622 Tripterygium wilfordii HOM05D006386 ORTHO05D007575 6.9e-14 82.0 143 37.1
Gorai.N008500 Gossypium raimondii HOM05D006386 ORTHO05D007575 3.8e-12 76.3 40 82.5
Gorai.007G248400 Gossypium raimondii HOM05D006386 ORTHO05D007575 6.4e-12 75.5 35 88.6
Aqoxy6G02623 Aquilegia oxysepala HOM05D006386 ORTHO05D007575 1.1e-08 64.7 105 40.0
Rhsim08G0139600 Rhododendron simsii HOM05D006386 ORTHO05D007575 1.1e-08 64.7 51 58.8
Mapoly0051s0086 Marchantia polymorpha HOM05D006386 ORTHO05D007575 1.6e-07 60.8 135 27.4
SalBow3G4562 Salvia bowleyana HOM05D038501 ORTHO05D007575 2.4e-06 57.0 33 84.8
SalBow4G0793 Salvia bowleyana HOM05D038501 ORTHO05D007575 2.4e-06 57.0 33 84.8
SalBow6G3071 Salvia bowleyana HOM05D038501 ORTHO05D007575 2.4e-06 57.0 33 84.8


User provided reference genes

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