Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 3.0e-87 325.1 160 100.0
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 1.6e-72 276.2 160 81.2
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 2.1e-72 275.8 160 81.9
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 6.1e-72 274.2 156 83.3
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 1.4e-71 273.1 155 83.2
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.4e-71 273.1 158 82.3
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.4e-71 273.1 158 82.3
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 2.3e-71 272.3 157 82.2
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 2.3e-71 272.3 157 82.2
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 4.0e-71 271.6 158 81.6
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 5.2e-71 271.2 160 80.0
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 6.8e-71 270.8 158 81.6
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 6.8e-71 270.8 160 81.2
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 8.9e-71 270.4 157 82.2
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 1.2e-70 270.0 160 80.0
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 1.2e-70 270.0 153 83.7
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 1.2e-70 270.0 160 80.6
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 1.5e-70 269.6 160 80.0
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 1.5e-70 269.6 160 81.2
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 3.4e-70 268.5 160 80.6
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 4.4e-70 268.1 161 80.7
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 4.4e-70 268.1 160 80.0
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 4.4e-70 268.1 161 81.4
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 4.4e-70 268.1 155 84.5
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 4.4e-70 268.1 160 79.4
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 9.8e-70 266.9 160 79.4
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 9.8e-70 266.9 157 80.9
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 1.3e-69 266.5 159 80.5
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 2.2e-69 265.8 157 80.3
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 2.2e-69 265.8 156 82.1
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 2.9e-69 265.4 160 80.6
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 2.9e-69 265.4 155 82.6
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 2.9e-69 265.4 155 82.6
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 3.7e-69 265.0 156 82.1
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 4.9e-69 264.6 165 77.6
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 4.9e-69 264.6 160 80.6
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 6.4e-69 264.2 160 80.0
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 8.3e-69 263.8 156 78.8
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 1.4e-68 263.1 160 79.4
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 1.4e-68 263.1 155 80.6
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.9e-68 262.7 153 83.7
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.4e-68 262.3 160 78.8
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.2e-68 261.9 160 79.4
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 4.1e-68 261.5 165 78.2
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 5.4e-68 261.2 160 77.5
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 7.0e-68 260.8 155 79.4
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 7.0e-68 260.8 153 79.1
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 7.0e-68 260.8 153 79.1
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 7.0e-68 260.8 153 79.1
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 1.2e-67 260.0 159 79.2
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 1.6e-67 259.6 163 76.7
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 2.0e-67 259.2 154 79.9
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 2.0e-67 259.2 161 75.2
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 2.7e-67 258.8 179 72.1
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 3.5e-67 258.5 155 79.4
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 4.6e-67 258.1 157 75.2
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 6.0e-67 257.7 141 88.7
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 6.0e-67 257.7 160 77.5
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 7.8e-67 257.3 156 80.1
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 7.8e-67 257.3 141 89.4
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 1.0e-66 256.9 152 81.6
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 1.3e-66 256.5 161 73.9
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 1.7e-66 256.1 161 78.9
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.7e-66 256.1 154 81.2
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 2.3e-66 255.8 157 77.1
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 2.3e-66 255.8 156 76.9
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.3e-66 255.8 153 77.8
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 6.6e-66 254.2 158 79.1
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 6.6e-66 254.2 157 77.1
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 6.6e-66 254.2 155 78.7
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 1.5e-65 253.1 180 70.6
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 1.5e-65 253.1 156 76.9
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 1.5e-65 253.1 155 77.4
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 1.9e-65 252.7 155 79.4
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.9e-65 252.7 158 76.6
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 1.9e-65 252.7 153 79.1
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 2.5e-65 252.3 160 79.4
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 3.3e-65 251.9 141 87.2
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 3.3e-65 251.9 153 78.4
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 5.6e-65 251.1 158 76.6
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 5.6e-65 251.1 163 75.5
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 2.8e-64 248.8 160 75.0
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 4.7e-64 248.1 160 75.0
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.1e-63 246.9 160 75.6
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 1.8e-63 246.1 144 81.9
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 2.3e-63 245.7 140 81.4
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 2.3e-63 245.7 165 72.1
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 3.1e-63 245.4 143 81.1
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 3.1e-63 245.4 163 74.8
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 8.9e-63 243.8 153 77.1
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 1.5e-62 243.0 180 66.7
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 1.5e-62 243.0 160 73.8
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 2.6e-62 242.3 160 73.1
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 9.8e-62 240.4 154 75.3
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 1.7e-61 239.6 156 75.6
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 1.7e-61 239.6 160 76.2
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 2.9e-61 238.8 141 80.1
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 2.9e-61 238.8 151 76.2
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 2.7e-59 232.3 141 77.3
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 1.7e-58 229.6 162 69.8
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 5.1e-58 228.0 162 69.1
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 6.6e-58 227.6 161 68.9
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 9.5e-57 223.8 162 68.5
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 1.6e-56 223.0 162 67.9
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 2.1e-56 222.6 162 68.5
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 4.7e-56 221.5 162 68.5
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 3.1e-55 218.8 162 67.3
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 5.2e-55 218.0 146 71.2
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 2.2e-53 212.6 162 66.0
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 2.2e-53 212.6 162 66.0
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 2.9e-53 212.2 159 66.0
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 2.9e-53 212.2 162 65.4
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 2.9e-53 212.2 159 66.0
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 3.7e-53 211.8 161 65.2
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 3.7e-53 211.8 157 67.5
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 3.7e-53 211.8 201 56.7
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 3.2e-52 208.8 141 70.9
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 7.1e-52 207.6 141 70.2
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 1.0e-50 203.8 132 73.5
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 6.6e-50 201.1 156 66.0
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 1.1e-49 200.3 148 67.6
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 1.1e-47 193.7 156 59.6
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 1.5e-46 189.9 113 77.9
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 3.0e-42 175.6 130 62.3
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 1.2e-38 163.7 93 86.0
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 2.9e-37 159.1 122 64.8
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 1.7e-34 149.8 93 74.2
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 2.5e-33 146.0 142 48.6
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 5.6e-33 144.8 140 52.1
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 1.2e-30 137.1 87 75.9
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 2.0e-30 136.3 98 67.3
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 1.1e-28 130.6 141 48.2
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 9.3e-28 127.5 73 79.5
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 5.6e-25 118.2 125 50.4
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 9.0e-23 110.9 125 48.0
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.2e-14 84.0 77 59.7
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 8.4e-13 77.8 50 78.0


User provided reference genes

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