Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g07460 Coffea canephora HOM05D007696 ORTHO05D009719 2.9e-129 465.3 248 100.0
QL10p022430 Quercus lobata HOM05D007696 ORTHO05D009719 2.2e-60 236.5 203 63.1
GSVIVG01008244001 Vitis vinifera HOM05D007696 ORTHO05D009719 2.4e-59 233.0 204 63.7
Lj9A429T50 Lonicera japonica HOM05D007696 ORTHO05D009719 1.7e-57 226.9 204 61.8
Actinidia39813 Actinidia chinensis HOM05D007696 ORTHO05D009719 9.6e-56 221.1 205 60.5
TWI81G0276 Tripterygium wilfordii HOM05D007696 ORTHO05D009719 9.6e-56 221.1 204 59.3
Lalb_Chr19g0140261 Lupinus albus HOM05D007696 ORTHO05D009719 2.1e-55 219.9 203 58.6
Potri.015G049800 Populus trichocarpa HOM05D007696 ORTHO05D009719 2.4e-54 216.5 204 60.8
Manes.01G020300 Manihot esculenta HOM05D007696 ORTHO05D009719 9.0e-54 214.5 205 57.1
FAN13G0134 Fragaria x ananassa HOM05D007696 ORTHO05D009719 1.2e-53 214.2 205 57.1
RcHm_v2.0_Chr7g0184691 Rosa chinensis HOM05D007696 ORTHO05D009719 2.6e-53 213.0 205 57.6
Lsat_1_v5_gn_4_115821 Lactuca sativa HOM05D007696 ORTHO05D009719 4.4e-53 212.2 204 56.4
FAN08G1182 Fragaria x ananassa HOM05D007696 ORTHO05D009719 7.6e-53 211.5 245 49.8
Dinv07368 Davidia involucrata HOM05D007696 ORTHO05D009719 4.9e-52 208.8 204 58.3
Aqoxy3G03910 Aquilegia oxysepala HOM05D007696 ORTHO05D009719 8.4e-52 208.0 205 55.1
FvH4_5g12640 Fragaria vesca HOM05D007696 ORTHO05D009719 1.1e-51 207.6 206 56.3
CiPaw.15G127500 Carya illinoinensis HOM05D007696 ORTHO05D009719 9.3e-51 204.5 203 55.2
Prupe.5G218000 Prunus persica HOM05D007696 ORTHO05D009719 1.2e-50 204.1 204 54.4
FAN18G3725 Fragaria x ananassa HOM05D007696 ORTHO05D009719 3.0e-49 199.5 241 51.0
Atru.chr9.778 Acer truncatum HOM05D007696 ORTHO05D009719 2.5e-48 196.4 200 56.0
Oeu055893.1 Olea europaea HOM05D007696 ORTHO05D009719 5.6e-48 195.3 172 60.5
ECA232G0656 Erigeron canadensis HOM05D007696 ORTHO05D009719 1.6e-47 193.7 204 51.5
vmacro17668 Vaccinium macrocarpon HOM05D007696 ORTHO05D009719 1.6e-47 193.7 204 55.4
FAN04G2461 Fragaria x ananassa HOM05D007696 ORTHO05D009719 6.2e-47 191.8 218 51.4
Lj3g0018148 Lotus japonicus HOM05D007696 ORTHO05D009719 1.8e-46 190.3 203 53.7
Cfa019805 Carpinus fangiana HOM05D007696 ORTHO05D009719 1.5e-45 187.2 196 52.6
arahy.Tifrunner.gnm1.ann1.ISQN6X Arachis hypogaea HOM05D007696 ORTHO05D009719 7.6e-45 184.9 203 54.2
AUR62032195 Chenopodium quinoa HOM05D007696 ORTHO05D009719 1.7e-44 183.7 204 52.5
Sc04g0003700 Simmondsia chinensis HOM05D007696 ORTHO05D009719 1.7e-44 183.7 203 49.3
CANSAT54G0455 Cannabis sativa HOM05D007696 ORTHO05D009719 2.9e-44 183.0 203 49.3
Phvul.011G012300 Phaseolus vulgaris HOM05D007696 ORTHO05D009719 4.9e-44 182.2 203 51.2
CANSAT54G2838 Cannabis sativa HOM05D007696 ORTHO05D009719 6.4e-44 181.8 203 49.3
Thecc.03G029300 Theobroma cacao HOM05D007696 ORTHO05D009719 8.4e-44 181.4 170 58.8
MD14G1222400 Malus domestica HOM05D007696 ORTHO05D009719 4.2e-43 179.1 205 48.8
AUR62036960 Chenopodium quinoa HOM05D007696 ORTHO05D009719 2.7e-42 176.4 204 52.0
Duzib068G0054 Durio zibethinus HOM05D007696 ORTHO05D009719 1.8e-41 173.7 170 55.9
PSO063G6876 Papaver somniferum HOM05D007696 ORTHO05D009719 2.3e-41 173.3 201 50.2
COL.COLO4_16235 Corchorus olitorius HOM05D007696 ORTHO05D009719 3.9e-41 172.6 170 56.5
Gohir.A08G094200 Gossypium hirsutum HOM05D007696 ORTHO05D009719 5.1e-41 172.2 170 55.9
Gohir.D08G105400 Gossypium hirsutum HOM05D007696 ORTHO05D009719 5.1e-41 172.2 170 56.5
TPR.G30177 Trifolium pratense HOM05D007696 ORTHO05D009719 5.1e-41 172.2 193 51.3
Gorai.004G112300 Gossypium raimondii HOM05D007696 ORTHO05D009719 8.7e-41 171.4 170 56.5
VMungo1127G1702 Vigna mungo HOM05D007696 ORTHO05D009719 1.1e-40 171.0 203 49.8
TAR622G0575 Trochodendron aralioides HOM05D007696 ORTHO05D009719 5.6e-40 168.7 172 54.1
THA.LOC104821847 Tarenaya hassleriana HOM05D007696 ORTHO05D009719 2.8e-39 166.4 162 54.3
Ciclev10022427m.g Citrus clementina HOM05D007696 ORTHO05D009719 4.8e-39 165.6 172 53.5
arahy.Tifrunner.gnm1.ann1.2ZW1BF Arachis hypogaea HOM05D007696 ORTHO05D009719 2.4e-38 163.3 238 45.8
MBI13_g27794_MAGBIO Magnolia biondii HOM05D007696 ORTHO05D009719 9.0e-38 161.4 194 48.5
CAN.G438.120 Capsicum annuum HOM05D007696 ORTHO05D009719 1.2e-37 161.0 172 52.9
HanXRQChr09g0269891 Helianthus annuus HOM05D007696 ORTHO05D009719 2.0e-37 160.2 220 43.6
Hund10004 Selenicereus undatus HOM05D007696 ORTHO05D009719 2.0e-37 160.2 204 48.0
Sp7g03680 Schrenkiella parvula HOM05D007696 ORTHO05D009719 7.6e-37 158.3 167 52.7
FAN18G2008 Fragaria x ananassa HOM05D007696 ORTHO05D009719 9.9e-37 157.9 276 40.2
Eucgr.K02660 Eucalyptus grandis HOM05D007696 ORTHO05D009719 1.7e-36 157.1 178 50.0
Thhalv10027967m.g Eutrema salsugineum HOM05D007696 ORTHO05D009719 2.2e-36 156.8 162 53.7
BcaB01g01733 Brassica carinata HOM05D007696 ORTHO05D009719 1.1e-35 154.5 162 53.1
Glyma.09G227800 Glycine max HOM05D007696 ORTHO05D009719 4.2e-35 152.5 172 51.2
Nn4g23733 Nelumbo nucifera HOM05D007696 ORTHO05D009719 9.3e-35 151.4 204 45.1
EL10Ac5g11256 Beta vulgaris HOM05D007696 ORTHO05D009719 1.0e-33 147.9 204 44.6
Psat7g166400 Pisum sativum HOM05D007696 ORTHO05D009719 4.8e-31 139.0 181 45.3
CSS0029722 Camellia sinensis var. sinensis HOM05D007696 ORTHO05D009719 4.0e-30 136.0 110 67.3
AT1G61415 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 1.3e-28 131.0 167 47.9
CARHR051130 Cardamine hirsuta HOM05D007696 ORTHO05D009719 3.8e-28 129.4 167 46.7
Medtr0085s0020 Medicago truncatula HOM05D007696 ORTHO05D009719 8.4e-28 128.3 124 53.2
AL2G14870 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 1.4e-27 127.5 167 47.3
DCAR_011551 Daucus carota HOM05D007696 ORTHO05D009719 7.1e-27 125.2 106 64.2
AL2G14920 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 9.3e-27 124.8 167 46.7
Cpa.g.sc13.41 Carica papaya HOM05D007696 ORTHO05D009719 1.0e-25 121.3 110 57.3
Rhsim08G0136100 Rhododendron simsii HOM05D007696 ORTHO05D009719 3.0e-25 119.8 266 35.3
Os05g0275600 Oryza sativa ssp. japonica HOM05D007696 ORTHO05D009719 6.7e-25 118.6 203 40.9
A09p26940 Brassica napus HOM05D007696 ORTHO05D009719 2.5e-24 116.7 162 45.1
BraA09t38264Z Brassica rapa HOM05D007696 ORTHO05D009719 2.5e-24 116.7 162 45.1
Zm00001eb347780 Zea mays HOM05D007696 ORTHO05D009719 7.4e-24 115.2 203 37.4
BcaC04g21230 Brassica carinata HOM05D007696 ORTHO05D009719 1.6e-23 114.0 162 43.8
C09p34110 Brassica napus HOM05D007696 ORTHO05D009719 1.6e-23 114.0 162 43.8
BolC9t56248H Brassica oleracea HOM05D007696 ORTHO05D009719 1.6e-23 114.0 162 43.8
Carub.0002s0377 Capsella rubella HOM05D007696 ORTHO05D009719 1.5e-21 107.5 167 43.1
Hma1.2p1_0340F.1_g129830 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 7.7e-21 105.1 74 74.3
Hma1.2p1_0340F.1_g129843 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 7.7e-21 105.1 74 74.3
Hma1.2p1_0340F.1_g129840 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 3.2e-19 99.8 95 55.8
Hma1.2p1_0340F.1_g129846 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 3.2e-19 99.8 95 55.8
CDE02G2124 Ceratophyllum demersum HOM05D007696 ORTHO05D009719 1.0e-17 94.7 101 51.5
Sabra15G0078100 Salix brachista HOM05D007696 ORTHO05D009719 3.9e-17 92.8 111 47.7
Haze_18634 Corylus avellana HOM05D007696 ORTHO05D009719 2.2e-15 87.0 74 64.9
AT1G61450 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 6.3e-15 85.5 103 49.5
Lsat_1_v5_gn_9_67701 Lactuca sativa HOM05D007696 ORTHO05D009719 1.4e-14 84.3 58 72.4
Aa31LG8G5380 Aethionema arabicum HOM05D007696 ORTHO05D009719 1.8e-09 67.4 139 34.5
VMungo0251G1113 Vigna mungo HOM05D007696 ORTHO05D009719 3.1e-06 56.6 105 41.0
Peaxi162Scf00211g01722 Petunia axillaris HOM05D007696 ORTHO05D009719 5.3e-06 55.8 68 41.2


User provided reference genes

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