Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 7.6e-29 129.8 65 100.0
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 8.4e-20 99.8 66 72.7
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 2.1e-18 95.1 68 70.6
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 1.8e-17 92.0 65 63.1
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 1.8e-17 92.0 55 80.0
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 2.3e-17 91.7 63 73.0
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 3.0e-17 91.3 63 71.4
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 8.7e-17 89.7 52 76.9
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 1.1e-16 89.4 55 76.4
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 1.1e-16 89.4 55 76.4
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 1.5e-16 89.0 55 78.2
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 1.5e-16 89.0 52 78.8
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 2.5e-16 88.2 57 75.4
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 2.8e-15 84.7 82 56.1
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 3.1e-14 81.3 63 66.7
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 1.5e-13 79.0 61 68.9
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 2.0e-13 78.6 65 60.0
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 3.4e-13 77.8 47 74.5
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 4.5e-13 77.4 63 63.5
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 4.5e-13 77.4 60 65.0
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 5.9e-13 77.0 61 65.6
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 7.6e-13 76.6 63 61.9
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 1.3e-12 75.9 61 62.3
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 1.3e-12 75.9 61 63.9
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 1.3e-12 75.9 57 61.4
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 1.7e-12 75.5 61 65.6
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 2.9e-12 74.7 65 60.0
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 2.9e-12 74.7 65 56.9
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 2.9e-12 74.7 65 56.9
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 3.8e-12 74.3 61 62.3
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 5.0e-12 73.9 63 58.7
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 6.5e-12 73.6 65 60.0
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 6.5e-12 73.6 65 60.0
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 8.4e-12 73.2 61 65.6
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 8.4e-12 73.2 65 60.0
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 8.4e-12 73.2 65 55.4
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 8.4e-12 73.2 64 57.8
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 1.1e-11 72.8 59 61.0
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 1.4e-11 72.4 63 60.3
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 1.4e-11 72.4 50 64.0
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 1.4e-11 72.4 61 54.1
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 2.5e-11 71.6 63 57.1
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 4.2e-11 70.9 63 58.7
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 4.2e-11 70.9 61 60.7
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 4.2e-11 70.9 61 60.7
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 5.5e-11 70.5 63 60.3
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 1.2e-10 69.3 57 61.4
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 3.5e-10 67.8 63 55.6
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 3.5e-10 67.8 65 55.4
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 6.1e-10 67.0 61 57.4
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 1.0e-09 66.2 48 60.4
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 1.3e-09 65.9 63 55.6
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 3.0e-09 64.7 62 54.8
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 5.1e-09 63.9 48 60.4
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 8.7e-09 63.2 61 55.7
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 8.7e-09 63.2 61 55.7
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 8.7e-09 63.2 61 55.7
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.5e-08 62.4 61 54.1
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.5e-08 62.4 61 54.1
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 1.5e-08 62.4 63 54.0
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 1.5e-08 62.4 63 52.4
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 1.9e-08 62.0 65 53.8
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 2.5e-08 61.6 55 50.9
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 3.3e-08 61.2 62 50.0
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 5.7e-08 60.5 64 43.8
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 1.3e-07 59.3 62 45.2
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 1.6e-07 58.9 56 50.0
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 2.2e-07 58.5 52 48.1
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 2.2e-07 58.5 52 48.1
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 2.2e-07 58.5 52 48.1
PGSC0003DMG401005708 Solanum tuberosum HOM05D007790 ORTHO05D009880 2.8e-07 58.2 34 73.5
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 4.8e-07 57.4 55 45.5
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 4.8e-07 57.4 55 45.5
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 4.8e-07 57.4 55 45.5
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 6.3e-07 57.0 52 48.1
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 8.2e-07 56.6 62 41.9
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 1.1e-06 56.2 64 40.6
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 1.8e-06 55.5 59 44.1
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 2.4e-06 55.1 62 41.9
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 2.4e-06 55.1 52 53.8
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 4.1e-06 54.3 62 40.3
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 6.9e-06 53.5 62 45.2


User provided reference genes

Program Settings