Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 4.3e-104 381.3 194 100.0
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 4.8e-63 245.0 198 65.7
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 2.2e-60 236.1 201 64.7
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 3.1e-54 215.7 194 64.4
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 3.1e-54 215.7 188 65.4
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 4.1e-54 215.3 198 62.1
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 9.2e-54 214.2 196 60.2
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 7.7e-53 211.1 188 63.8
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 1.0e-52 210.7 195 62.1
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.0e-52 210.7 201 58.2
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 1.7e-52 209.9 197 59.9
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 2.3e-52 209.5 192 61.5
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 6.6e-52 208.0 186 64.5
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 1.1e-51 207.2 195 60.0
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.5e-51 206.8 186 64.5
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 1.5e-51 206.8 186 64.5
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 1.9e-51 206.5 192 60.9
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 4.3e-51 205.3 197 60.4
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 4.3e-51 205.3 201 56.2
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 4.3e-51 205.3 195 59.5
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 5.6e-51 204.9 201 59.7
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 2.1e-50 203.0 201 61.7
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 2.8e-50 202.6 196 60.2
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 3.6e-50 202.2 204 58.8
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 1.8e-49 199.9 165 64.2
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 2.3e-49 199.5 190 60.0
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 3.0e-49 199.1 201 59.7
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 1.5e-48 196.8 205 57.6
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 2.0e-48 196.4 188 60.1
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 2.0e-48 196.4 190 60.0
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 5.7e-48 194.9 204 57.4
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 7.5e-48 194.5 188 57.4
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 9.8e-48 194.1 197 57.4
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 2.2e-47 193.0 198 56.6
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 2.9e-47 192.6 181 59.7
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 3.7e-47 192.2 197 54.8
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 3.7e-47 192.2 197 56.9
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 8.3e-47 191.0 198 60.6
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 1.8e-46 189.9 186 59.7
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 2.4e-46 189.5 167 64.7
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 2.4e-46 189.5 153 64.7
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 2.4e-46 189.5 174 59.8
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 4.1e-46 188.7 170 61.8
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 5.4e-46 188.3 196 57.1
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 7.0e-46 188.0 186 58.1
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 7.8e-45 184.5 186 55.9
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 7.8e-45 184.5 186 57.0
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 1.0e-44 184.1 203 55.2
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 1.3e-44 183.7 194 56.2
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.3e-44 183.7 186 55.9
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 2.3e-44 183.0 180 62.2
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 3.9e-44 182.2 186 55.9
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 8.6e-44 181.0 196 55.6
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 8.6e-44 181.0 155 63.2
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 9.5e-43 177.6 167 56.9
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 9.5e-43 177.6 243 46.9
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 1.6e-42 176.8 167 60.5
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 2.8e-42 176.0 186 55.4
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.8e-42 176.0 186 55.4
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 2.8e-42 176.0 120 72.5
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 3.6e-42 175.6 165 59.4
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 4.7e-42 175.3 198 55.6
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 4.7e-42 175.3 190 53.7
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 6.2e-42 174.9 193 55.4
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 8.0e-42 174.5 192 52.6
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 1.8e-41 173.3 192 52.6
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 8.9e-41 171.0 174 58.6
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.2e-40 170.6 136 64.0
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.7e-39 166.8 165 61.2
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 3.7e-39 165.6 195 54.9
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 4.9e-39 165.2 221 47.5
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 1.1e-38 164.1 170 55.9
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 1.1e-38 164.1 188 52.7
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 1.9e-38 163.3 207 48.3
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 3.2e-38 162.5 185 51.9
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.7e-36 156.8 200 48.5
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 2.3e-36 156.4 191 56.0
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 3.0e-36 156.0 191 52.9
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 3.0e-36 156.0 191 52.9
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 3.0e-36 156.0 191 52.9
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 3.0e-36 156.0 177 55.9
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 5.0e-36 155.2 176 52.3
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 8.6e-36 154.5 179 55.9
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 8.6e-36 154.5 184 53.3
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 1.5e-35 153.7 191 52.4
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 1.9e-35 153.3 181 52.5
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 1.9e-35 153.3 184 53.3
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 2.5e-35 152.9 176 52.3
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 3.3e-35 152.5 201 45.8
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 9.5e-35 151.0 194 51.0
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 4.7e-34 148.7 188 52.1
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 4.7e-34 148.7 188 52.1
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 2.3e-33 146.4 138 59.4
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 5.2e-33 145.2 188 49.5
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 4.4e-32 142.1 181 50.8
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 4.4e-32 142.1 181 50.8
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 5.8e-32 141.7 181 51.4
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 7.5e-32 141.4 184 50.0
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 1.3e-31 140.6 166 47.6
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 2.2e-31 139.8 178 51.7
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 1.4e-30 137.1 190 47.9
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 5.4e-30 135.2 98 68.4
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 5.4e-30 135.2 98 68.4
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 5.4e-30 135.2 98 68.4
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 9.2e-30 134.4 193 46.6
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 1.6e-29 133.7 174 51.7
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 4.6e-29 132.1 168 51.2
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 6.0e-29 131.7 94 67.0
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 9.5e-27 124.4 188 45.2
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 4.0e-25 119.0 185 43.2
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 1.5e-24 117.1 87 62.1
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 3.4e-24 115.9 126 50.8
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 5.8e-24 115.2 97 56.7
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 1.9e-22 110.2 191 45.0
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.4e-22 108.6 119 49.6
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 1.5e-19 100.5 145 46.9
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 9.6e-19 97.8 104 46.2
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 6.2e-18 95.1 87 51.7
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 6.2e-18 95.1 87 51.7
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 8.1e-18 94.7 194 40.7
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 5.2e-17 92.0 199 39.7
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 8.9e-17 91.3 116 52.6
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 4.9e-15 85.5 160 43.1
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.0e-12 77.8 42 73.8
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 1.1e-11 74.3 93 41.9
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 1.6e-10 70.5 181 33.7
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 2.8e-10 69.7 39 71.8
FAN22G1271 Fragaria x ananassa HOM05D038641 ORTHO05D035590 2.6e-08 63.2 65 53.8
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 7.6e-08 61.6 138 31.2
Glyma.09G185300 Glycine max HOM05D005829 ORTHO05D007246 1.7e-07 60.5 113 34.5
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 2.9e-07 59.7 105 34.3
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 2.9e-07 59.7 205 28.8


User provided reference genes

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