Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 2.6e-58 228.4 106 100.0
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 1.4e-51 206.1 101 90.1
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 8.8e-51 203.4 107 86.9
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 1.2e-50 203.0 101 90.1
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 1.2e-50 203.0 101 94.1
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 2.0e-50 202.2 106 86.8
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 2.0e-50 202.2 106 86.8
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 2.0e-50 202.2 106 87.7
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 3.4e-50 201.4 102 91.2
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 1.3e-49 199.5 103 86.4
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 2.2e-49 198.7 107 84.1
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 2.8e-49 198.4 103 86.4
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.7e-49 198.0 103 85.4
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 4.8e-49 197.6 101 87.1
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 4.8e-49 197.6 103 85.4
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 4.8e-49 197.6 101 85.1
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 1.8e-48 195.7 100 87.0
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 4.1e-48 194.5 101 85.1
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 4.1e-48 194.5 106 83.0
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 4.1e-48 194.5 106 83.0
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 4.1e-48 194.5 101 86.1
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 7.0e-48 193.7 101 85.1
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 7.0e-48 193.7 102 83.3
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 9.1e-48 193.4 102 84.3
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 9.1e-48 193.4 103 83.5
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.2e-47 193.0 101 87.1
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.2e-47 193.0 101 87.1
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 1.6e-47 192.6 105 81.9
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 2.0e-47 192.2 101 87.1
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 2.7e-47 191.8 104 85.6
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 2.7e-47 191.8 102 88.2
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 3.5e-47 191.4 102 83.3
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 4.5e-47 191.0 99 84.8
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 4.5e-47 191.0 96 87.5
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 5.9e-47 190.7 96 86.5
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 5.9e-47 190.7 107 84.1
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 5.9e-47 190.7 107 84.1
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 7.7e-47 190.3 107 82.2
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 7.7e-47 190.3 102 84.3
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 7.7e-47 190.3 101 84.2
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 7.7e-47 190.3 107 85.0
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 1.0e-46 189.9 102 85.3
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 1.0e-46 189.9 107 79.4
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 1.0e-46 189.9 107 84.1
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 1.3e-46 189.5 107 84.1
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.3e-46 189.5 107 85.0
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 1.7e-46 189.1 107 84.1
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 1.7e-46 189.1 107 82.2
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.7e-46 189.1 107 84.1
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 2.2e-46 188.7 102 85.3
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 2.9e-46 188.3 107 83.2
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.9e-46 188.3 107 82.2
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 2.9e-46 188.3 107 82.2
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 5.0e-46 187.6 107 83.2
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 5.0e-46 187.6 107 81.3
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 5.0e-46 187.6 104 82.7
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 5.0e-46 187.6 96 86.5
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 6.5e-46 187.2 107 83.2
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 6.5e-46 187.2 102 82.4
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 8.5e-46 186.8 106 83.0
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 8.5e-46 186.8 107 82.2
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 8.5e-46 186.8 107 83.2
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 8.5e-46 186.8 102 85.3
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 8.5e-46 186.8 98 84.7
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 8.5e-46 186.8 106 79.2
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 1.1e-45 186.4 107 82.2
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 1.1e-45 186.4 107 82.2
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 1.1e-45 186.4 95 86.3
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 1.5e-45 186.0 107 82.2
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 1.5e-45 186.0 107 82.2
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 1.5e-45 186.0 107 82.2
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 1.5e-45 186.0 107 82.2
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 2.5e-45 185.3 99 86.9
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 2.5e-45 185.3 99 86.9
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 2.5e-45 185.3 107 78.5
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 3.2e-45 184.9 107 81.3
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 3.2e-45 184.9 107 82.2
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 3.2e-45 184.9 107 82.2
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 3.2e-45 184.9 107 81.3
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 4.2e-45 184.5 107 83.2
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 4.2e-45 184.5 107 83.2
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 4.2e-45 184.5 97 86.6
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 4.2e-45 184.5 107 79.4
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 4.2e-45 184.5 107 81.3
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 5.5e-45 184.1 107 83.2
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 5.5e-45 184.1 107 83.2
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 5.5e-45 184.1 107 83.2
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 5.5e-45 184.1 105 79.0
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 7.2e-45 183.7 102 83.3
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 7.2e-45 183.7 107 78.5
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 9.5e-45 183.3 107 81.3
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 9.5e-45 183.3 107 81.3
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 9.5e-45 183.3 106 80.2
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 9.5e-45 183.3 106 78.3
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 9.5e-45 183.3 107 78.5
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 1.6e-44 182.6 107 80.4
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 2.1e-44 182.2 107 80.4
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 2.8e-44 181.8 101 80.2
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 2.8e-44 181.8 107 76.6
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 3.6e-44 181.4 99 84.8
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 3.6e-44 181.4 95 84.2
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 3.6e-44 181.4 95 84.2
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 4.7e-44 181.0 101 77.2
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 6.1e-44 180.6 97 83.5
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 6.1e-44 180.6 97 83.5
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 8.0e-44 180.3 107 81.3
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 1.0e-43 179.9 96 83.3
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 1.4e-43 179.5 101 82.2
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 1.8e-43 179.1 101 82.2
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 2.3e-43 178.7 107 77.6
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 4.0e-43 177.9 99 79.8
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 5.2e-43 177.6 97 81.4
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 5.2e-43 177.6 107 74.8
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 8.8e-43 176.8 97 83.5
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 8.8e-43 176.8 104 76.9
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 2.0e-42 175.6 103 76.7
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 2.0e-42 175.6 98 80.6
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 2.0e-42 175.6 105 77.1
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 2.6e-42 175.3 97 83.5
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 3.4e-42 174.9 99 79.8
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 3.4e-42 174.9 99 79.8
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 3.4e-42 174.9 99 79.8
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 3.4e-42 174.9 99 79.8
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 3.4e-42 174.9 99 79.8
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 3.4e-42 174.9 96 80.2
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 5.7e-42 174.1 97 79.4
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 9.8e-42 173.3 100 80.0
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 1.3e-41 172.9 95 83.2
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.3e-41 172.9 98 79.6
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 8.3e-41 170.2 97 77.3
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 9.2e-40 166.8 98 75.5
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 1.2e-39 166.4 98 75.5
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.3e-38 162.9 84 82.1
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 3.3e-37 158.3 94 76.6
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 1.7e-33 146.0 78 84.6
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 4.9e-33 144.4 84 76.2
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 2.0e-31 139.0 68 86.8
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 2.8e-28 128.6 71 78.9
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 8.0e-28 127.1 68 83.8
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 3.1e-27 125.2 75 74.7
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 6.8e-27 124.0 83 68.7
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.2e-26 123.2 84 66.7
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 1.2e-26 123.2 75 80.0
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 2.0e-26 122.5 84 66.7
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 2.2e-25 119.0 87 62.1
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 1.2e-23 113.2 66 75.8
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.7e-22 109.4 89 59.6
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 2.3e-22 109.0 102 55.9
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 5.6e-21 104.4 84 53.6
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 2.3e-19 99.0 52 76.9
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 1.4e-16 89.7 70 62.9
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 2.4e-16 89.0 73 53.4
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 5.6e-13 77.8 50 74.0
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 9.5e-13 77.0 54 70.4
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.2e-12 76.6 60 65.0
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 2.1e-12 75.9 36 94.4
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 3.6e-12 75.1 36 94.4
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 5.8e-10 67.8 72 45.8


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