Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 4.8e-83 311.2 169 100.0
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 4.0e-13 79.0 147 37.4
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 1.5e-12 77.0 156 42.3
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 2.0e-12 76.6 155 41.9
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 3.4e-12 75.9 155 41.9
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 4.4e-12 75.5 148 39.9
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.7e-11 73.6 143 39.9
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 2.9e-11 72.8 113 43.4
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 3.7e-11 72.4 139 40.3
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 8.3e-11 71.2 145 38.6
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 1.9e-10 70.1 144 37.5
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.9e-10 70.1 147 39.5
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 1.9e-10 70.1 151 38.4
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 2.4e-10 69.7 155 38.7
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 3.2e-10 69.3 147 40.1
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 4.1e-10 68.9 148 35.8
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 5.4e-10 68.6 147 39.5
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.4e-10 68.6 76 50.0
PGR083G0382 Punica granatum HOM05D003094 ORTHO05D003482 9.2e-10 67.8 142 35.9
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 9.2e-10 67.8 135 40.0
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-09 67.4 76 48.7
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.2e-09 67.4 76 48.7
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 1.6e-09 67.0 98 46.9
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 2.1e-09 66.6 122 44.3
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.5e-09 65.9 122 35.2
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.5e-09 65.9 155 38.7
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 4.6e-09 65.5 107 41.1
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 4.6e-09 65.5 82 48.8
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 6.0e-09 65.1 142 38.0
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.0e-09 65.1 155 36.8
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 6.0e-09 65.1 154 37.0
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 7.8e-09 64.7 157 38.2
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 7.8e-09 64.7 116 44.0
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 7.8e-09 64.7 155 38.1
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 1.0e-08 64.3 159 39.0
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.0e-08 64.3 155 36.8
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.3e-08 63.9 122 36.9
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.3e-08 63.9 155 36.8
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 1.7e-08 63.5 163 36.2
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.7e-08 63.5 151 37.7
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.7e-08 63.5 141 39.0
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 1.7e-08 63.5 159 36.5
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 1.7e-08 63.5 107 43.0
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 2.3e-08 63.2 135 36.3
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.3e-08 63.2 121 36.4
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.3e-08 63.2 173 34.7
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 3.0e-08 62.8 151 34.4
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 3.0e-08 62.8 153 32.7
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 3.9e-08 62.4 146 34.9
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 5.1e-08 62.0 161 34.2
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 5.1e-08 62.0 139 35.3
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 5.1e-08 62.0 151 39.1
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 6.6e-08 61.6 146 39.0
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 6.6e-08 61.6 145 37.9
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.6e-08 61.2 71 50.7
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 8.6e-08 61.2 80 43.8
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.1e-07 60.8 160 36.2
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 1.1e-07 60.8 160 36.2
Ca_25471_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.1e-07 60.8 104 41.3
Ca_29690_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.1e-07 60.8 104 41.3
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.1e-07 60.8 151 37.1
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 1.1e-07 60.8 126 37.3
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 1.5e-07 60.5 142 37.3
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.9e-07 60.1 66 56.1
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.9e-07 60.1 69 50.7
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 1.9e-07 60.1 155 36.8
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.9e-07 60.1 98 43.9
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.5e-07 59.7 169 37.3
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 2.5e-07 59.7 122 40.2
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.5e-07 59.7 134 37.3
Lj2g0001179 Lotus japonicus HOM05D003094 ORTHO05D003482 2.5e-07 59.7 146 34.2
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 2.5e-07 59.7 143 35.0
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 2.5e-07 59.7 115 41.7
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 3.3e-07 59.3 149 33.6
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 3.3e-07 59.3 163 35.6
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 3.3e-07 59.3 142 36.6
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 4.3e-07 58.9 102 42.2
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.3e-07 58.9 66 53.0
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 4.3e-07 58.9 65 53.8
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 4.3e-07 58.9 71 47.9
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 5.6e-07 58.5 157 35.0
Sabra12G0032200 Salix brachista HOM05D003094 ORTHO05D003482 5.6e-07 58.5 147 34.7
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 7.3e-07 58.2 124 39.5
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 7.3e-07 58.2 128 39.1
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 7.3e-07 58.2 65 53.8
Medtr6g082590 Medicago truncatula HOM05D003094 ORTHO05D003482 9.5e-07 57.8 137 34.3
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 9.5e-07 57.8 113 39.8
Glyma.09G180400 Glycine max HOM05D003094 ORTHO05D003482 1.2e-06 57.4 132 33.3
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-06 57.4 65 52.3
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.2e-06 57.4 98 40.8
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 1.6e-06 57.0 71 47.9
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 2.1e-06 56.6 124 37.9
Phvul.004G153600 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 2.1e-06 56.6 141 36.2
Psat1g035120 Pisum sativum HOM05D003094 ORTHO05D003482 2.1e-06 56.6 122 34.4
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 2.1e-06 56.6 150 36.7
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 2.8e-06 56.2 146 34.2
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.8e-06 56.2 149 34.2
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 2.8e-06 56.2 61 50.8
Potri.012G046000 Populus trichocarpa HOM05D003094 ORTHO05D003482 2.8e-06 56.2 151 33.8
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 2.8e-06 56.2 151 33.1
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 2.8e-06 56.2 144 35.4
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 3.6e-06 55.8 128 38.3
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 3.6e-06 55.8 154 33.8
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 3.6e-06 55.8 149 34.2
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 3.6e-06 55.8 147 38.8
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 4.7e-06 55.5 148 35.1
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 4.7e-06 55.5 131 39.7
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 4.7e-06 55.5 147 31.3
VMungo0464G0085 Vigna mungo HOM05D013688 ORTHO05D013355 4.7e-06 55.5 144 35.4
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 6.2e-06 55.1 72 43.1
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 6.2e-06 55.1 120 35.8
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 8.1e-06 54.7 145 32.4


User provided reference genes

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