Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g06820 Coffea canephora HOM05D007058 ORTHO05D009036 1.7e-230 802.4 419 100.0
Nitab4.5_0006894g0050 Nicotiana tabacum HOM05D007058 ORTHO05D009036 3.5e-159 565.5 406 71.4
Nitab4.5_0001456g0070 Nicotiana tabacum HOM05D007058 ORTHO05D009036 5.0e-158 561.6 408 70.6
Dinv12229 Davidia involucrata HOM05D007058 ORTHO05D009036 2.2e-153 546.2 404 72.0
PGSC0003DMG400005667 Solanum tuberosum HOM05D007058 ORTHO05D009036 3.7e-153 545.4 411 68.4
Peaxi162Scf00683g00337 Petunia axillaris HOM05D007058 ORTHO05D009036 6.4e-153 544.7 406 68.7
Lj9A424T33 Lonicera japonica HOM05D007058 ORTHO05D009036 1.9e-152 543.1 414 69.8
Solyc03g118860.3 Solanum lycopersicum HOM05D007058 ORTHO05D009036 9.2e-152 540.8 411 67.6
Hma1.2p1_1614F.1_g293670 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 1.6e-151 540.0 405 70.6
Hma1.2p1_2594F.1_g325085 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 2.1e-151 539.7 401 71.1
Sopen03g037810 Solanum pennellii HOM05D007058 ORTHO05D009036 7.8e-151 537.7 411 67.6
CAN.G1129.46 Capsicum annuum HOM05D007058 ORTHO05D009036 2.2e-145 519.6 404 67.3
Actinidia02670 Actinidia chinensis HOM05D007058 ORTHO05D009036 4.9e-145 518.5 404 68.3
FAN18G2897 Fragaria x ananassa HOM05D007058 ORTHO05D009036 3.0e-142 509.2 409 66.3
QL10p026796 Quercus lobata HOM05D007058 ORTHO05D009036 3.0e-142 509.2 416 65.9
Migut.I00419 Erythranthe guttata HOM05D007058 ORTHO05D009036 8.6e-142 507.7 390 67.7
GSVIVG01008345001 Vitis vinifera HOM05D007058 ORTHO05D009036 1.1e-141 507.3 413 66.3
FAN08G1503 Fragaria x ananassa HOM05D007058 ORTHO05D009036 7.3e-141 504.6 409 66.3
FAN13G1457 Fragaria x ananassa HOM05D007058 ORTHO05D009036 9.6e-141 504.2 409 66.0
Sc12g0007400 Simmondsia chinensis HOM05D007058 ORTHO05D009036 2.8e-140 502.7 406 65.5
FAN04G2101 Fragaria x ananassa HOM05D007058 ORTHO05D009036 6.2e-140 501.5 409 66.0
Ciclev10020201m.g Citrus clementina HOM05D007058 ORTHO05D009036 1.8e-139 500.0 414 63.3
RcHm_v2.0_Chr7g0179381 Rosa chinensis HOM05D007058 ORTHO05D009036 9.0e-139 497.7 413 64.6
COL.COLO4_38517 Corchorus olitorius HOM05D007058 ORTHO05D009036 8.4e-137 491.1 413 63.0
Thecc.03G043100 Theobroma cacao HOM05D007058 ORTHO05D009036 1.9e-136 490.0 407 64.9
PGR044G0638 Punica granatum HOM05D007058 ORTHO05D009036 3.2e-136 489.2 393 65.1
Nn3g17960 Nelumbo nucifera HOM05D007058 ORTHO05D009036 9.3e-136 487.6 423 61.7
Duzib205G0828 Durio zibethinus HOM05D007058 ORTHO05D009036 1.2e-135 487.3 406 64.3
Atru.chr9.916 Acer truncatum HOM05D007058 ORTHO05D009036 6.0e-135 485.0 406 64.8
Prupe.5G225300 Prunus persica HOM05D007058 ORTHO05D009036 7.8e-135 484.6 407 64.1
Gohir.A07G059500 Gossypium hirsutum HOM05D007058 ORTHO05D009036 1.0e-134 484.2 402 64.4
TWI60G0394 Tripterygium wilfordii HOM05D007058 ORTHO05D009036 1.0e-134 484.2 403 64.5
Manes.01G015400 Manihot esculenta HOM05D007058 ORTHO05D009036 2.3e-134 483.0 401 63.3
TAR629G3445 Trochodendron aralioides HOM05D007058 ORTHO05D009036 2.5e-133 479.6 404 62.4
TAR535G0005 Trochodendron aralioides HOM05D007058 ORTHO05D009036 4.8e-132 475.3 404 62.1
Potri.012G053600 Populus trichocarpa HOM05D007058 ORTHO05D009036 1.1e-131 474.2 416 61.3
Aqoxy3G04055 Aquilegia oxysepala HOM05D007058 ORTHO05D009036 1.8e-131 473.4 402 62.7
Cpa.g.sc3.458 Carica papaya HOM05D007058 ORTHO05D009036 9.0e-131 471.1 410 61.5
MD06G1220900 Malus domestica HOM05D007058 ORTHO05D009036 2.0e-130 469.9 408 63.5
Hund02350 Selenicereus undatus HOM05D007058 ORTHO05D009036 2.6e-130 469.5 403 60.5
MELO3C002112.2 Cucumis melo HOM05D007058 ORTHO05D009036 3.4e-130 469.2 399 61.9
CANSAT80G0903 Cannabis sativa HOM05D007058 ORTHO05D009036 5.8e-130 468.4 390 63.8
arahy.Tifrunner.gnm1.ann1.8NC01M Arachis hypogaea HOM05D007058 ORTHO05D009036 2.9e-129 466.1 407 59.7
Sabra12G0037400 Salix brachista HOM05D007058 ORTHO05D009036 2.9e-129 466.1 409 62.1
TAR371G0970 Trochodendron aralioides HOM05D007058 ORTHO05D009036 2.9e-129 466.1 401 62.3
ClCG04G010870 Citrullus lanatus HOM05D007058 ORTHO05D009036 1.9e-128 463.4 402 61.9
arahy.Tifrunner.gnm1.ann1.LC4GJT Arachis hypogaea HOM05D007058 ORTHO05D009036 2.4e-128 463.0 396 60.6
AUR62033787 Chenopodium quinoa HOM05D007058 ORTHO05D009036 1.2e-127 460.7 414 59.9
CsaV3_1G006960 Cucumis sativus L. HOM05D007058 ORTHO05D009036 1.6e-127 460.3 399 60.7
PSO063G1254 Papaver somniferum HOM05D007058 ORTHO05D009036 1.6e-127 460.3 379 63.3
EL10Ac5g11484 Beta vulgaris HOM05D007058 ORTHO05D009036 2.1e-127 459.9 401 60.8
Sed0017039 Sechium edule HOM05D007058 ORTHO05D009036 2.1e-127 459.9 400 61.8
PSO782G5502 Papaver somniferum HOM05D007058 ORTHO05D009036 7.9e-127 458.0 379 62.3
Oeu017513.1 Olea europaea HOM05D007058 ORTHO05D009036 2.3e-126 456.4 340 68.8
Haze_18744 Corylus avellana HOM05D007058 ORTHO05D009036 5.1e-126 455.3 398 62.6
MD14G1230300 Malus domestica HOM05D007058 ORTHO05D009036 5.1e-126 455.3 407 62.4
Eucgr.K02237 Eucalyptus grandis HOM05D007058 ORTHO05D009036 4.0e-123 445.7 347 65.1
THA.LOC104813907 Tarenaya hassleriana HOM05D007058 ORTHO05D009036 5.3e-123 445.3 399 58.9
MBI16_g25105_MAGBIO Magnolia biondii HOM05D007058 ORTHO05D009036 2.6e-122 443.0 399 58.9
ATR0681G321 Amborella trichopoda HOM05D007058 ORTHO05D009036 2.0e-114 416.8 415 54.0
Lj4g0007182 Lotus japonicus HOM05D007058 ORTHO05D009036 2.0e-114 416.8 404 56.7
CARHR066810 Cardamine hirsuta HOM05D007058 ORTHO05D009036 2.2e-113 413.3 411 55.2
C06p47890 Brassica napus HOM05D007058 ORTHO05D009036 2.7e-111 406.4 408 54.7
BolC6t39824H Brassica oleracea HOM05D007058 ORTHO05D009036 2.7e-111 406.4 408 54.7
VMungo0251G0619 Vigna mungo HOM05D007058 ORTHO05D009036 4.6e-111 405.6 384 56.8
A07p39600 Brassica napus HOM05D007058 ORTHO05D009036 6.0e-111 405.2 409 54.5
HPP92_023400 Vanilla planifolia HOM05D007058 ORTHO05D009036 1.3e-110 404.1 404 51.2
BraA07t31509Z Brassica rapa HOM05D007058 ORTHO05D009036 2.3e-110 403.3 409 54.0
Thhalv10018574m.g Eutrema salsugineum HOM05D007058 ORTHO05D009036 2.3e-110 403.3 405 53.8
BcaB03g15080 Brassica carinata HOM05D007058 ORTHO05D009036 1.1e-109 401.0 407 54.5
Aa31LG4G4070 Aethionema arabicum HOM05D007058 ORTHO05D009036 1.3e-108 397.5 411 55.2
Sp5g28930 Schrenkiella parvula HOM05D007058 ORTHO05D009036 4.8e-108 395.6 413 53.0
AL2G33550 Arabidopsis lyrata HOM05D007058 ORTHO05D009036 1.1e-107 394.4 402 52.5
Carub.0002s2049 Capsella rubella HOM05D007058 ORTHO05D009036 1.1e-107 394.4 389 54.2
AT1G73740 Arabidopsis thaliana HOM05D007058 ORTHO05D009036 7.6e-106 388.3 401 52.1
Gorai.001G067900 Gossypium raimondii HOM05D007058 ORTHO05D009036 1.6e-103 380.6 320 62.8
HPP92_027335 Vanilla planifolia HOM05D007058 ORTHO05D009036 5.1e-102 375.6 383 52.0
HPP92_017197 Vanilla planifolia HOM05D007058 ORTHO05D009036 3.3e-101 372.9 410 50.0
AUR62029919 Chenopodium quinoa HOM05D007058 ORTHO05D009036 2.4e-99 366.7 319 59.9
Phvul.002G325300 Phaseolus vulgaris HOM05D007058 ORTHO05D009036 5.3e-99 365.5 378 52.9
FvH4_5g16720 Fragaria vesca HOM05D007058 ORTHO05D009036 6.1e-95 352.1 290 64.1
Rhsim08G0129700 Rhododendron simsii HOM05D007058 ORTHO05D009036 5.7e-93 345.5 291 62.9
Glyma.05G242000 Glycine max HOM05D007058 ORTHO05D009036 5.5e-88 328.9 297 56.9
Mapoly0014s0012 Marchantia polymorpha HOM05D007058 ORTHO05D009036 9.1e-83 311.6 415 41.9
SMO271G0182 Selaginella moellendorffii HOM05D007058 ORTHO05D009036 8.5e-81 305.1 396 44.7
Mapoly0014s0018 Marchantia polymorpha HOM05D007058 ORTHO05D009036 5.3e-75 285.8 381 42.3
Pp3c1_26880 Physcomitrium patens HOM05D007058 ORTHO05D009036 5.3e-75 285.8 388 40.5
SMO308G0041 Selaginella moellendorffii HOM05D007058 ORTHO05D009036 3.5e-74 283.1 432 41.0
AagrBONN_evm.TU.Sc2ySwM_228.2408 Anthoceros agrestis HOM05D007058 ORTHO05D009036 2.7e-66 256.9 302 48.3
Gohir.D07G064300 Gossypium hirsutum HOM05D007058 ORTHO05D009036 2.6e-61 240.4 209 59.8
MCO02G081 Micromonas commoda HOM05D007058 ORTHO05D009036 7.5e-61 238.8 408 37.0
Os01g0516700 Oryza sativa ssp. japonica HOM05D007058 ORTHO05D009036 2.2e-60 237.3 304 44.1
PRCOL_00000956 Prasinoderma coloniale HOM05D007058 ORTHO05D009036 1.0e-57 228.4 388 37.4
CBR_g74658 Chara braunii HOM05D007058 ORTHO05D009036 6.8e-46 189.1 604 26.0
Glyma.08G049500 Glycine max HOM05D007058 ORTHO05D009036 5.8e-45 186.0 198 48.5
Zm00001eb132130 Zea mays HOM05D007058 ORTHO05D009036 2.1e-39 167.5 247 40.5
Glyma.08G049450 Glycine max HOM05D007058 ORTHO05D009036 3.6e-39 166.8 116 71.6
CAN.G1074.8 Capsicum annuum HOM05D007058 ORTHO05D009036 1.8e-38 164.5 130 65.4
arahy.Tifrunner.gnm1.ann1.4SU3WD Arachis hypogaea HOM05D007058 ORTHO05D009036 4.6e-34 149.8 131 56.5
SalBow5G0499 Salvia bowleyana HOM05D007058 ORTHO05D010040 4.3e-32 143.3 136 56.6
Cre12.g527950 Chlamydomonas reinhardtii HOM05D007058 ORTHO05D009036 3.2e-27 127.1 361 28.5
CAN.G169.6 Capsicum annuum HOM05D007058 ORTHO05D009036 1.4e-22 111.7 125 52.0
Gorai.001G067800 Gossypium raimondii HOM05D007058 ORTHO05D009036 3.1e-22 110.5 85 70.6
AUR62029918 Chenopodium quinoa HOM05D007058 ORTHO05D009036 1.7e-20 104.8 78 66.7
Ah.11g045170 Amaranthus hybridus HOM05D007058 ORTHO05D009036 1.4e-19 101.7 81 65.4
SEGI_28231 Sequoiadendron giganteum HOM05D007058 ORTHO05D009036 4.2e-19 100.1 77 63.6
CAN.G507.4 Capsicum annuum HOM05D006747 ORTHO05D008384 9.3e-19 99.0 78 64.1
BcaC08g46795 Brassica carinata HOM05D007058 ORTHO05D009036 3.1e-14 84.0 84 50.0
Gohir.D07G064250 Gossypium hirsutum HOM05D007058 ORTHO05D009036 9.9e-13 79.0 66 68.2
Rhsim08G0129900 Rhododendron simsii HOM05D007058 ORTHO05D009036 1.4e-11 75.1 45 84.4
arahy.Tifrunner.gnm1.ann1.MMR300 Arachis hypogaea HOM05D007058 ORTHO05D009036 7.1e-11 72.8 62 56.5
Rhsim08G0129800 Rhododendron simsii HOM05D007058 ORTHO05D021411 2.5e-08 64.3 37 83.8
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 6.2e-07 59.7 52 59.6
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.1e-06 58.9 37 73.0
CAN.G1014.20 Capsicum annuum HOM05D007058 ORTHO05D021411 3.1e-06 57.4 37 73.0


User provided reference genes

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