Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 4.2e-150 534.6 264 100.0
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 6.7e-100 367.9 262 68.3
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 4.5e-96 355.1 254 68.9
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 1.5e-94 350.1 260 69.2
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 1.9e-94 349.7 259 69.5
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.6e-91 339.3 268 65.7
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 4.4e-91 338.6 238 70.6
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.2e-90 336.3 268 64.9
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 1.8e-89 333.2 207 75.4
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.4e-89 332.8 268 64.6
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 7.0e-89 331.3 215 73.5
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 1.2e-88 330.5 263 63.5
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 2.7e-88 329.3 227 73.1
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 2.7e-88 329.3 243 68.3
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 2.2e-87 326.2 268 63.4
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 2.2e-87 326.2 239 68.6
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 2.2e-87 326.2 241 67.6
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 2.2e-87 326.2 259 63.3
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 3.8e-87 325.5 264 63.3
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 6.5e-87 324.7 265 64.5
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 1.1e-86 323.9 274 62.8
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 1.1e-86 323.9 261 62.8
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 2.5e-86 322.8 258 64.3
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 3.2e-86 322.4 263 63.9
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 4.2e-86 322.0 263 63.9
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 7.2e-86 321.2 223 71.7
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 7.2e-86 321.2 244 63.5
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 9.4e-86 320.9 261 60.9
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 9.4e-86 320.9 243 66.7
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 2.7e-85 319.3 261 64.4
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 6.1e-85 318.2 246 65.4
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 6.1e-85 318.2 246 65.4
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 8.0e-85 317.8 239 67.4
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 1.8e-84 316.6 246 64.6
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 5.2e-84 315.1 253 62.8
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 6.8e-84 314.7 263 61.2
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 6.8e-84 314.7 207 72.0
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 8.8e-84 314.3 248 64.5
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 8.8e-84 314.3 246 65.0
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 1.2e-83 313.9 242 66.5
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 2.0e-83 313.2 213 70.9
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.6e-83 312.8 207 73.9
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 2.6e-83 312.8 246 64.2
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 3.4e-83 312.4 264 61.4
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 5.7e-83 311.6 251 62.9
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 9.8e-83 310.8 207 73.9
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.3e-82 310.5 246 64.2
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 1.3e-82 310.5 268 60.4
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.7e-82 310.1 246 64.2
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 1.7e-82 310.1 210 72.9
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 1.7e-82 310.1 270 60.0
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 4.9e-82 308.5 207 72.0
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 6.3e-82 308.1 180 82.2
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 1.1e-81 307.4 207 72.5
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 1.4e-81 307.0 261 59.4
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 2.4e-81 306.2 217 67.3
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 2.4e-81 306.2 236 64.8
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 9.2e-81 304.3 180 80.6
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 2.0e-80 303.1 242 64.0
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 2.0e-80 303.1 237 64.1
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 4.5e-80 302.0 206 72.3
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 5.9e-80 301.6 180 80.0
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 5.9e-80 301.6 242 65.3
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 5.9e-80 301.6 217 70.0
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 5.9e-80 301.6 263 61.2
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 5.9e-80 301.6 280 58.9
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 7.7e-80 301.2 206 71.8
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 1.3e-79 300.4 180 80.0
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 1.3e-79 300.4 180 80.0
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 1.3e-79 300.4 257 61.1
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 1.7e-79 300.1 206 72.8
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 5.0e-79 298.5 227 66.5
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 8.6e-79 297.7 177 80.2
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 8.6e-79 297.7 233 64.8
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 1.2e-77 293.9 206 70.9
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 2.1e-77 293.1 206 69.9
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 4.7e-77 292.0 175 76.0
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 1.0e-76 290.8 176 76.7
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 5.2e-76 288.5 222 63.5
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 2.6e-75 286.2 237 60.3
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 9.8e-75 284.3 207 65.7
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 9.8e-75 284.3 251 60.2
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 1.7e-74 283.5 229 62.0
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 9.2e-73 277.7 174 75.3
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 1.6e-72 276.9 180 70.0
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 2.0e-72 276.6 161 80.1
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 7.8e-72 274.6 197 65.0
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 1.0e-71 274.2 219 61.2
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 1.0e-71 274.2 184 71.7
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 2.3e-71 273.1 201 66.7
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 2.3e-71 273.1 209 64.1
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 2.3e-71 273.1 245 57.6
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 8.6e-71 271.2 174 74.1
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 1.9e-70 270.0 162 75.3
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 2.1e-69 266.5 242 58.3
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 2.8e-69 266.2 176 74.4
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 3.1e-68 262.7 149 79.9
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 4.0e-68 262.3 174 69.0
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 4.4e-67 258.8 248 56.9
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 8.9e-60 234.6 207 60.9
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 1.2e-59 234.2 206 57.8
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 5.8e-59 231.9 202 57.9
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 1.7e-55 220.3 210 52.4
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 8.9e-52 208.0 196 52.6
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 2.9e-50 203.0 120 75.0
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.6e-48 197.2 177 55.9
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 6.0e-48 195.3 180 51.7
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 2.1e-40 170.2 151 63.6
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 5.4e-33 145.6 94 68.1
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 9.3e-33 144.8 166 51.8
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.3e-31 141.0 162 52.5
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 2.2e-26 123.6 134 50.7
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 4.2e-25 119.4 171 38.6
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 2.1e-21 107.1 176 36.9
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 3.4e-19 99.8 86 65.1
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 3.4e-19 99.8 86 64.0
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 7.6e-19 98.6 86 64.0
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 3.8e-18 96.3 86 62.8
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 6.5e-18 95.5 86 62.8
SEGI_17791 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 1.9e-14 84.0 60 60.0
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 5.3e-12 75.9 76 60.5
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 2.6e-11 73.6 75 50.7
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.3e-10 71.2 67 53.7
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 2.1e-08 63.9 87 43.7
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 7.9e-08 62.0 72 52.8
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 6.7e-07 58.9 72 50.0
VMungo0647G1967 Vigna mungo HOM05D006376 ORTHO05D008046 5.7e-06 55.8 39 74.4


User provided reference genes

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