Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g06640 Coffea canephora HOM05D002209 ORTHO05D007926 1.4e-105 386.3 197 100.0
Nitab4.5_0000150g0080 Nicotiana tabacum HOM05D002209 ORTHO05D007926 1.5e-83 313.2 197 79.2
Peaxi162Scf00683g10026 Petunia axillaris HOM05D002209 ORTHO05D007926 3.6e-82 308.5 197 77.2
Nitab4.5_0012369g0010 Nicotiana tabacum HOM05D002209 ORTHO05D007926 6.2e-82 307.8 197 77.2
MSTRG.22939 Avicennia marina HOM05D002209 ORTHO05D007926 1.4e-81 306.6 196 78.1
PGSC0003DMG400005659 Solanum tuberosum HOM05D002209 ORTHO05D007926 2.3e-81 305.8 196 77.0
SalBow5G1692 Salvia bowleyana HOM05D002209 ORTHO05D007926 3.1e-81 305.4 192 78.1
Sopen00g010550 Solanum pennellii HOM05D002209 ORTHO05D007926 3.1e-81 305.4 196 76.5
CSS0012934 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 5.2e-81 304.7 196 78.1
CSS0018698 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 5.2e-81 304.7 196 78.1
CAN.G1129.32 Capsicum annuum HOM05D002209 ORTHO05D007926 6.8e-81 304.3 196 77.6
SGA_v2.0_scaffold21G09613 Striga asiatica HOM05D002209 ORTHO05D007926 6.8e-81 304.3 196 77.6
Actinidia18911 Actinidia chinensis HOM05D002209 ORTHO05D007926 2.2e-79 299.3 196 76.0
Sc10g0009340 Simmondsia chinensis HOM05D002209 ORTHO05D007926 6.4e-79 297.7 190 77.4
Migut.L01913 Erythranthe guttata HOM05D002209 ORTHO05D007926 1.1e-78 297.0 196 76.5
GSVIVG01008385001 Vitis vinifera HOM05D002209 ORTHO05D007926 1.1e-78 297.0 196 75.0
Actinidia35109 Actinidia chinensis HOM05D002209 ORTHO05D007926 4.1e-78 295.0 196 75.0
Nitab4.5_0001158g0030 Nicotiana tabacum HOM05D002209 ORTHO05D007926 2.7e-77 292.4 179 79.9
Hma1.2p1_1257F.1_g270850 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 3.0e-76 288.9 196 74.5
Rhsim12G0139900 Rhododendron simsii HOM05D002209 ORTHO05D007926 6.6e-76 287.7 189 76.2
Solyc03g119010.3 Solanum lycopersicum HOM05D002209 ORTHO05D007926 1.9e-75 286.2 179 78.8
Ah.11g045280 Amaranthus hybridus HOM05D002209 ORTHO05D007926 2.5e-75 285.8 194 75.3
Atru.chr9.948 Acer truncatum HOM05D002209 ORTHO05D007926 7.3e-75 284.3 195 73.3
Ciclev10009263m.g Citrus clementina HOM05D002209 ORTHO05D007926 2.1e-74 282.7 195 73.8
Lsat_1_v5_gn_3_114081 Lactuca sativa HOM05D002209 ORTHO05D007926 4.7e-74 281.6 190 74.7
ECA240G0871 Erigeron canadensis HOM05D002209 ORTHO05D007926 6.2e-74 281.2 190 74.2
Potri.015G041800 Populus trichocarpa HOM05D002209 ORTHO05D007926 2.4e-73 279.3 196 70.9
PGR083G0394 Punica granatum HOM05D002209 ORTHO05D007926 5.2e-73 278.1 190 72.6
TAR622G1089 Trochodendron aralioides HOM05D002209 ORTHO05D007926 8.9e-73 277.3 196 71.9
Manes.14G168500 Manihot esculenta HOM05D002209 ORTHO05D007926 1.2e-72 276.9 196 70.9
Sabra15G0055300 Salix brachista HOM05D002209 ORTHO05D007926 1.2e-72 276.9 196 70.9
EL10Ac5g11521 Beta vulgaris HOM05D002209 ORTHO05D007926 3.4e-72 275.4 196 71.4
TWI81G0293 Tripterygium wilfordii HOM05D002209 ORTHO05D007926 1.3e-71 273.5 194 71.6
MELO3C002120.2 Cucumis melo HOM05D002209 ORTHO05D007926 1.7e-71 273.1 193 68.4
Cfa019698 Carpinus fangiana HOM05D002209 ORTHO05D007926 2.9e-71 272.3 197 68.5
CsaV3_1G007020 Cucumis sativus L. HOM05D002209 ORTHO05D007926 4.9e-71 271.6 193 67.9
CANSAT80G1708 Cannabis sativa HOM05D002209 ORTHO05D007926 9.3e-70 267.3 197 70.6
CANSAT80G2078 Cannabis sativa HOM05D002209 ORTHO05D007926 9.3e-70 267.3 197 70.6
ClCG04G010780 Citrullus lanatus HOM05D002209 ORTHO05D007926 9.3e-70 267.3 193 67.4
Phvul.002G327300 Phaseolus vulgaris HOM05D002209 ORTHO05D007926 2.7e-69 265.8 196 66.3
CiPaw.15G139100 Carya illinoinensis HOM05D002209 ORTHO05D007926 3.5e-69 265.4 195 68.2
Sed0021446 Sechium edule HOM05D002209 ORTHO05D007926 6.0e-69 264.6 193 66.3
Thecc.06G020700 Theobroma cacao HOM05D002209 ORTHO05D007926 1.3e-68 263.5 194 66.0
unitig_27.g24963 Utricularia gibba HOM05D002209 ORTHO05D007926 1.3e-68 263.5 184 71.7
VMungo0251G3506 Vigna mungo HOM05D002209 ORTHO05D007926 3.0e-68 262.3 190 68.4
Lj4g0023570 Lotus japonicus HOM05D002209 ORTHO05D007926 5.1e-68 261.5 196 66.3
Lalb_Chr09g0330531 Lupinus albus HOM05D002209 ORTHO05D007926 5.1e-68 261.5 190 67.4
Medtr8g106740 Medicago truncatula HOM05D002209 ORTHO05D007926 6.6e-68 261.2 196 65.3
Sabra15G0061600 Salix brachista HOM05D002209 ORTHO05D007926 1.1e-67 260.4 231 60.6
Aqoxy3G00431 Aquilegia oxysepala HOM05D002209 ORTHO05D007926 2.5e-67 259.2 196 67.9
Duzib160G0876 Durio zibethinus HOM05D002209 ORTHO05D007926 2.5e-67 259.2 191 67.5
Glyma.08G051400 Glycine max HOM05D002209 ORTHO05D007926 2.5e-67 259.2 196 65.3
MBI13_g00575_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D007926 2.5e-67 259.2 190 67.9
Glyma.05G243600 Glycine max HOM05D002209 ORTHO05D007926 3.3e-67 258.8 197 65.5
Gohir.D06G123100 Gossypium hirsutum HOM05D002209 ORTHO05D007926 5.6e-67 258.1 195 66.7
Gorai.010G143200 Gossypium raimondii HOM05D002209 ORTHO05D007926 1.3e-66 256.9 195 66.2
PSO478G0876 Papaver somniferum HOM05D002209 ORTHO05D007926 1.6e-66 256.5 189 68.8
PSO017G1461 Papaver somniferum HOM05D002209 ORTHO05D007926 2.8e-66 255.8 189 68.8
QL10p027511 Quercus lobata HOM05D002209 ORTHO05D007926 3.6e-66 255.4 198 65.7
CDE08G0043 Ceratophyllum demersum HOM05D002209 ORTHO05D007926 1.1e-65 253.8 191 67.5
Eucgr.B00853 Eucalyptus grandis HOM05D002209 ORTHO05D007926 1.1e-65 253.8 190 65.8
HPP92_026682 Vanilla planifolia HOM05D002209 ORTHO05D007926 1.1e-65 253.8 187 67.4
Gohir.A06G114800 Gossypium hirsutum HOM05D002209 ORTHO05D007926 2.0e-64 249.6 195 65.1
MD00G1160500 Malus domestica HOM05D002209 ORTHO05D007926 2.0e-64 249.6 197 64.5
arahy.Tifrunner.gnm1.ann1.X5TZ4V Arachis hypogaea HOM05D002209 ORTHO05D007926 2.6e-64 249.2 190 64.2
DCAR_011381 Daucus carota HOM05D002209 ORTHO05D007926 2.6e-64 249.2 189 66.1
arahy.Tifrunner.gnm1.ann1.A2QZNW Arachis hypogaea HOM05D002209 ORTHO05D007926 5.8e-64 248.1 190 64.2
HanXRQChr03g0090991 Helianthus annuus HOM05D002209 ORTHO05D007926 5.8e-64 248.1 176 70.5
arahy.Tifrunner.gnm1.ann1.IWL1UH Arachis hypogaea HOM05D002209 ORTHO05D007926 7.6e-64 247.7 196 62.8
Carub.0003s1789 Capsella rubella HOM05D002209 ORTHO05D007926 1.3e-63 246.9 190 65.3
AUR62033751 Chenopodium quinoa HOM05D002209 ORTHO05D007926 1.3e-63 246.9 199 66.8
THA.LOC104820370 Tarenaya hassleriana HOM05D002209 ORTHO05D007926 1.7e-63 246.5 191 65.4
Prupe.5G229800 Prunus persica HOM05D002209 ORTHO05D007926 2.2e-63 246.1 197 62.9
arahy.Tifrunner.gnm1.ann1.7LX2IS Arachis hypogaea HOM05D002209 ORTHO05D007926 4.9e-63 245.0 196 61.7
TPR.G12761 Trifolium pratense HOM05D002209 ORTHO05D007926 4.9e-63 245.0 196 62.2
Oeu014368.1 Olea europaea HOM05D002209 ORTHO05D007926 6.4e-63 244.6 164 73.8
BcaB04g20790 Brassica carinata HOM05D002209 ORTHO05D007926 8.4e-63 244.2 189 64.6
AT3G18165 Arabidopsis thaliana HOM05D002209 ORTHO05D007926 1.1e-62 243.8 190 65.3
CARHR093490 Cardamine hirsuta HOM05D002209 ORTHO05D007926 2.4e-62 242.7 190 64.7
BraA05t21994Z Brassica rapa HOM05D002209 ORTHO05D007926 3.2e-62 242.3 190 63.7
A05p31590 Brassica napus HOM05D002209 ORTHO05D007926 4.2e-62 241.9 190 63.7
Nn2g14536 Nelumbo nucifera HOM05D002209 ORTHO05D007926 5.4e-62 241.5 179 67.0
AL3G31340 Arabidopsis lyrata HOM05D002209 ORTHO05D007926 9.3e-62 240.7 190 64.7
C05p47920 Brassica napus HOM05D002209 ORTHO05D007926 1.2e-61 240.4 190 63.2
Thhalv10021375m.g Eutrema salsugineum HOM05D002209 ORTHO05D007926 1.2e-61 240.4 190 63.7
BcaC05g28661 Brassica carinata HOM05D002209 ORTHO05D007926 1.6e-61 240.0 190 63.2
BolC5t33504H Brassica oleracea HOM05D002209 ORTHO05D007926 1.6e-61 240.0 190 63.2
BcaC09g48772 Brassica carinata HOM05D002209 ORTHO05D007926 2.1e-61 239.6 190 63.2
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 2.1e-61 239.6 190 63.2
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 3.5e-61 238.8 190 62.6
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 1.0e-60 237.3 190 62.1
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.0e-60 237.3 190 62.1
Lalb_Chr16g0387151 Lupinus albus HOM05D002209 ORTHO05D007926 1.0e-60 237.3 163 70.6
vmacro16426 Vaccinium macrocarpon HOM05D002209 ORTHO05D007926 3.0e-60 235.7 229 56.8
Sp3g16280 Schrenkiella parvula HOM05D002209 ORTHO05D007926 5.1e-60 235.0 190 62.1
Hund02335 Selenicereus undatus HOM05D002209 ORTHO05D007926 6.6e-60 234.6 191 66.0
Zm00001eb128260 Zea mays HOM05D002209 ORTHO05D007926 2.8e-58 229.2 184 59.8
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.4e-57 226.9 180 63.9
RcHm_v2.0_Chr7g0178821 Rosa chinensis HOM05D002209 ORTHO05D007926 3.1e-57 225.7 190 63.7
MD14G1233600 Malus domestica HOM05D002209 ORTHO05D007926 5.3e-57 224.9 179 63.1
ATR0068G069 Amborella trichopoda HOM05D002209 ORTHO05D007926 1.3e-55 220.3 182 61.0
Ca_14628_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 1.7e-55 219.9 196 59.7
FvH4_5g17030 Fragaria vesca HOM05D002209 ORTHO05D007926 6.4e-55 218.0 192 61.5
FAN13G0553 Fragaria x ananassa HOM05D002209 ORTHO05D007926 1.4e-54 216.9 190 62.1
FAN08G0602 Fragaria x ananassa HOM05D002209 ORTHO05D007926 3.2e-54 215.7 190 61.6
FAN18G2854 Fragaria x ananassa HOM05D002209 ORTHO05D007926 6.0e-53 211.5 180 63.3
Lj9A422G65 Lonicera japonica HOM05D002209 ORTHO05D007926 1.1e-51 207.2 151 70.9
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 1.5e-48 196.8 200 53.5
Pp3c9_17380 Physcomitrium patens HOM05D002209 ORTHO05D007926 7.6e-48 194.5 183 53.6
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.3e-47 193.7 134 71.6
Mapoly0110s0002 Marchantia polymorpha HOM05D002209 ORTHO05D007926 4.9e-47 191.8 184 53.3
COL.COLO4_07530 Corchorus olitorius HOM05D002209 ORTHO05D007926 3.9e-44 182.2 135 67.4
Dinv13547 Davidia involucrata HOM05D002209 ORTHO05D007926 3.9e-44 182.2 196 52.0
AagrBONN_evm.TU.Sc2ySwM_344.2039 Anthoceros agrestis HOM05D002209 ORTHO05D007926 5.1e-44 181.8 177 52.5
AUR62029954 Chenopodium quinoa HOM05D002209 ORTHO05D007926 1.5e-40 170.2 131 67.9
CBR_g46893 Chara braunii HOM05D006221 ORTHO05D007759 4.5e-40 168.7 187 49.7
HPP92_018005 Vanilla planifolia HOM05D002209 ORTHO05D007926 3.9e-36 155.6 129 56.6
SMO339G0064 Selaginella moellendorffii HOM05D002209 ORTHO05D007926 9.7e-35 151.0 197 41.1
Hma1.2p1_1257F.1_g270860 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 5.3e-33 145.2 83 85.5
Psat7g003920 Pisum sativum HOM05D002209 ORTHO05D007926 6.1e-29 131.7 83 72.3
SEGI_33728 Sequoiadendron giganteum HOM05D002209 ORTHO05D007926 4.8e-26 122.1 83 69.9
MCO11G869 Micromonas commoda HOM05D002209 ORTHO05D007926 1.2e-24 117.5 188 36.2
Cre17.g697350 Chlamydomonas reinhardtii HOM05D002209 ORTHO05D007926 2.9e-23 112.8 174 37.4
C05p44850 Brassica napus HOM05D002209 ORTHO05D007926 3.6e-21 105.9 79 65.8
BolC5t33212H Brassica oleracea HOM05D002209 ORTHO05D007926 3.6e-21 105.9 79 65.8
Ca_17308_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 6.1e-21 105.1 84 66.7
AUR62029953 Chenopodium quinoa HOM05D002209 ORTHO05D007926 2.3e-20 103.2 96 59.4
Psat7g003960 Pisum sativum HOM05D002209 ORTHO05D007926 3.3e-19 99.4 78 67.9
A10p11050 Brassica napus HOM05D002209 ORTHO05D033214 4.7e-13 79.0 58 60.3
BraA10t43197Z Brassica rapa HOM05D002209 ORTHO05D033214 7.7e-08 61.6 70 45.7
BolC6t38528H Brassica oleracea HOM05D002209 ORTHO05D033214 3.2e-06 56.2 46 52.2


User provided reference genes

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