Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 2.0e-251 872.1 487 100.0
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 1.8e-146 523.5 486 61.9
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 7.4e-145 518.1 475 61.9
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 5.9e-142 508.4 482 62.9
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 2.5e-140 503.1 409 66.5
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 4.0e-138 495.7 492 58.7
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 5.7e-137 491.9 417 62.8
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 7.7e-134 481.5 424 60.8
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.3e-133 480.7 500 58.4
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.7e-133 480.3 420 60.7
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 5.0e-133 478.8 383 63.7
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 4.7e-131 472.2 403 60.5
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 1.8e-130 470.3 374 65.8
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 3.0e-130 469.5 385 64.2
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 6.8e-130 468.4 384 63.5
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 8.8e-130 468.0 365 64.9
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 1.5e-129 467.2 416 60.1
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 2.0e-129 466.8 364 65.7
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 5.7e-129 465.3 395 60.8
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 5.7e-129 465.3 384 64.1
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 7.5e-129 464.9 351 67.5
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 2.8e-128 463.0 324 73.8
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 8.3e-128 461.5 404 60.1
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 2.7e-126 456.4 355 64.8
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 4.5e-126 455.7 355 63.9
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 5.9e-126 455.3 359 64.6
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 1.0e-125 454.5 374 62.8
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 2.2e-125 453.4 391 60.9
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 2.2e-125 453.4 393 61.6
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 3.8e-125 452.6 464 56.2
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 6.5e-125 451.8 388 62.1
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 8.5e-125 451.4 410 58.5
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 1.1e-124 451.1 361 64.3
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.9e-124 450.3 359 63.5
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 2.5e-124 449.9 365 63.0
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 3.2e-124 449.5 380 61.3
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.5e-124 448.7 360 63.9
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 7.2e-124 448.4 410 58.3
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 1.6e-123 447.2 359 64.1
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 2.1e-123 446.8 382 61.5
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 2.1e-123 446.8 422 57.8
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 2.8e-123 446.4 367 62.9
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.6e-123 446.0 382 61.5
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 6.1e-123 445.3 346 64.5
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 6.8e-122 441.8 528 50.2
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 2.2e-120 436.8 323 70.6
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 4.9e-120 435.6 368 62.8
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 6.3e-120 435.3 330 66.4
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 1.1e-119 434.5 416 55.5
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 1.4e-119 434.1 381 61.2
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 3.1e-119 433.0 346 64.2
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 9.2e-119 431.4 356 61.8
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 4.5e-118 429.1 411 55.7
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 4.5e-118 429.1 356 61.2
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 1.7e-117 427.2 387 57.6
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 3.8e-117 426.0 303 69.3
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 3.8e-117 426.0 419 55.6
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 1.9e-116 423.7 375 58.7
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 7.3e-116 421.8 409 56.2
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 1.2e-115 421.0 363 60.6
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 1.6e-115 420.6 380 60.0
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 3.6e-115 419.5 381 58.0
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 6.1e-115 418.7 375 58.4
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 1.4e-114 417.5 375 58.9
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 2.6e-113 413.3 390 56.4
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 3.4e-113 412.9 365 57.3
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 7.5e-113 411.8 357 58.5
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 1.7e-112 410.6 329 63.2
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 2.2e-112 410.2 335 66.9
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 2.2e-112 410.2 371 58.8
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 1.8e-111 407.1 340 62.9
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.4e-111 406.8 382 58.1
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 2.7e-110 403.3 371 57.1
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.5e-110 402.9 348 61.8
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 1.0e-109 401.4 313 62.9
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 3.9e-109 399.4 335 61.5
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.9e-109 399.4 368 57.1
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.9e-109 399.4 357 60.2
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 4.3e-108 396.0 310 63.9
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 4.3e-108 396.0 358 58.4
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 4.7e-107 392.5 381 55.6
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 1.0e-106 391.3 330 59.4
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 2.3e-106 390.2 361 56.8
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 2.3e-106 390.2 330 61.2
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 4.0e-106 389.4 358 56.7
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.2e-105 387.9 324 61.1
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 3.7e-104 382.9 374 53.5
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 4.9e-104 382.5 331 61.6
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 3.0e-101 373.2 295 61.0
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 1.6e-99 367.5 257 69.3
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.1e-95 354.8 391 49.4
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 4.1e-95 352.8 461 43.8
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 3.6e-91 339.7 281 62.6
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 2.3e-90 337.0 281 61.9
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 1.1e-87 328.2 272 62.5
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.6e-84 315.8 368 49.2
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 9.0e-82 308.5 234 66.2
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 6.4e-80 302.4 307 56.7
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 1.5e-73 281.2 394 46.4
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 9.9e-73 278.5 237 60.8
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 8.1e-67 258.8 263 52.9
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 9.0e-66 255.4 290 44.5
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.8e-64 250.0 229 56.3
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 1.0e-61 241.9 229 55.5
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 3.9e-61 240.0 275 48.4
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 8.2e-59 232.3 210 57.1
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.2e-55 220.3 176 61.9
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 5.5e-55 219.5 178 61.8
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 2.8e-51 207.2 304 39.5
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.3e-48 198.4 251 43.4
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 2.5e-47 194.1 190 50.0
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 1.1e-44 185.3 192 52.6
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 1.2e-41 175.3 192 53.1
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 7.7e-41 172.6 122 68.9
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 6.7e-37 159.5 173 53.2
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 2.0e-33 147.9 147 55.1
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 6.5e-32 142.9 186 45.2
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 2.5e-31 141.0 111 62.2
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 5.2e-29 133.3 152 48.0
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 2.6e-28 131.0 196 43.4
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 4.5e-25 120.2 78 74.4
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 8.5e-24 115.9 236 35.6
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 2.5e-23 114.4 313 31.0
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 7.2e-23 112.8 79 64.6
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 9.4e-23 112.5 112 58.0
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 1.4e-21 108.6 99 55.6
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 6.7e-21 106.3 195 40.0
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.5e-20 105.1 233 35.6
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 4.4e-20 103.6 109 56.9
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 9.7e-20 102.4 190 37.9
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 1.4e-18 98.6 107 49.5
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 1.2e-17 95.5 63 68.3
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 1.2e-17 95.5 60 75.0
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 7.7e-17 92.8 199 32.2
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 3.8e-16 90.5 157 40.1
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 1.8e-13 81.6 57 66.7
AagrBONN_evm.TU.Sc2ySwM_117.460 Anthoceros agrestis HOM05D005158 ORTHO05D005510 3.0e-13 80.9 257 27.2
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 6.8e-13 79.7 62 62.9
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 1.1e-10 72.4 311 24.4
MCO07G404 Micromonas commoda HOM05D005158 ORTHO05D005510 1.0e-08 65.9 284 24.6
CBR_g49491 Chara braunii HOM05D005158 ORTHO05D005510 1.7e-08 65.1 194 28.9
Pp3c15_24210 Physcomitrium patens HOM05D005158 ORTHO05D005510 8.6e-08 62.8 260 23.5


User provided reference genes

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