Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g06260 Coffea canephora HOM05D007068 ORTHO05D008590 2.9e-244 848.2 451 100.0
Oeu031766.1 Olea europaea HOM05D007068 ORTHO05D008590 1.1e-73 281.6 463 40.6
PGSC0003DMG400005672 Solanum tuberosum HOM05D007068 ORTHO05D008590 6.0e-72 275.8 454 42.5
Solyc03g118700.3 Solanum lycopersicum HOM05D007068 ORTHO05D008590 2.5e-70 270.4 456 41.9
CAN.G843.56 Capsicum annuum HOM05D007068 ORTHO05D008590 1.1e-68 265.0 454 40.7
Nitab4.5_0003401g0040 Nicotiana tabacum HOM05D007068 ORTHO05D008590 5.2e-68 262.7 451 41.9
Nitab4.5_0004556g0050 Nicotiana tabacum HOM05D007068 ORTHO05D008590 8.9e-68 261.9 460 40.7
SalBow1G5613 Salvia bowleyana HOM05D007068 ORTHO05D008590 8.9e-68 261.9 455 40.2
Peaxi162Scf00683g00453 Petunia axillaris HOM05D007068 ORTHO05D008590 1.2e-64 251.5 457 40.3
Migut.D01541 Erythranthe guttata HOM05D007068 ORTHO05D008590 1.6e-64 251.1 468 37.8
Dinv17551 Davidia involucrata HOM05D007068 ORTHO05D008590 2.7e-64 250.4 427 42.9
MELO3C017359.2 Cucumis melo HOM05D007068 ORTHO05D008590 5.1e-63 246.1 471 38.6
Peaxi162Scf00683g00454 Petunia axillaris HOM05D007068 ORTHO05D008590 2.8e-61 240.4 459 38.3
Hma1.2p1_0669F.1_g200120 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 8.1e-61 238.8 485 40.0
CSS0009831 Camellia sinensis var. sinensis HOM05D007068 ORTHO05D008590 1.1e-60 238.4 466 40.3
CsaV3_1G004370 Cucumis sativus L. HOM05D007068 ORTHO05D008590 5.2e-60 236.1 466 38.2
SGA_v2.0_scaffold36G14383 Striga asiatica HOM05D007068 ORTHO05D008590 5.2e-60 236.1 458 39.5
Actinidia39838 Actinidia chinensis HOM05D007068 ORTHO05D008590 1.3e-58 231.5 467 39.6
Sed0003101 Sechium edule HOM05D007068 ORTHO05D008590 4.9e-58 229.6 482 37.8
Cfa019656 Carpinus fangiana HOM05D007068 ORTHO05D008590 1.4e-57 228.0 456 38.8
CiPaw.16G093400 Carya illinoinensis HOM05D007068 ORTHO05D008590 3.2e-57 226.9 457 37.9
Thecc.03G056900 Theobroma cacao HOM05D007068 ORTHO05D008590 7.1e-57 225.7 459 38.3
TAR622G0435 Trochodendron aralioides HOM05D007068 ORTHO05D008590 3.9e-55 219.9 483 38.7
Atru.chr9.1734 Acer truncatum HOM05D007068 ORTHO05D008590 2.1e-53 214.2 459 38.3
COL.COLO4_04377 Corchorus olitorius HOM05D007068 ORTHO05D008590 4.0e-52 209.9 458 36.7
Duzib084G0836 Durio zibethinus HOM05D007068 ORTHO05D008590 1.5e-51 208.0 454 37.0
ClCG06G014310 Citrullus lanatus HOM05D007068 ORTHO05D008590 1.1e-49 201.8 465 35.1
Eucgr.K02273 Eucalyptus grandis HOM05D007068 ORTHO05D008590 3.2e-49 200.3 481 36.6
Haze_18849 Corylus avellana HOM05D007068 ORTHO05D008590 4.2e-49 199.9 475 37.5
CANSAT80G0386 Cannabis sativa HOM05D007068 ORTHO05D008590 1.6e-48 198.0 468 35.0
Lsat_1_v5_gn_2_14700 Lactuca sativa HOM05D007068 ORTHO05D008590 7.8e-48 195.7 329 41.6
Rhsim08G0124500 Rhododendron simsii HOM05D007068 ORTHO05D008590 1.3e-47 194.9 453 36.0
Gohir.D07G066400 Gossypium hirsutum HOM05D007068 ORTHO05D008590 6.6e-47 192.6 466 36.5
Potri.012G047000 Populus trichocarpa HOM05D007068 ORTHO05D008590 1.1e-46 191.8 471 35.9
Manes.14G171300 Manihot esculenta HOM05D007068 ORTHO05D008590 2.5e-46 190.7 454 32.6
GSVIVG01011540001 Vitis vinifera HOM05D007068 ORTHO05D008590 4.3e-46 189.9 456 34.0
Gorai.001G070000 Gossypium raimondii HOM05D007068 ORTHO05D008590 9.6e-46 188.7 468 36.1
Aa31LG10G5220 Aethionema arabicum HOM05D007068 ORTHO05D008590 1.6e-45 188.0 464 33.0
Gohir.A07G061700 Gossypium hirsutum HOM05D007068 ORTHO05D008590 1.6e-45 188.0 464 35.3
RcHm_v2.0_Chr7g0178441 Rosa chinensis HOM05D007068 ORTHO05D008590 2.1e-45 187.6 453 33.3
AL1G55220 Arabidopsis lyrata HOM05D007068 ORTHO05D008590 4.8e-45 186.4 464 33.2
Ca_17189_v3 Cicer arietinum L. HOM05D007068 ORTHO05D008590 6.2e-45 186.0 466 33.3
C06p03180 Brassica napus HOM05D007068 ORTHO05D008590 8.1e-45 185.7 461 32.3
PSO478G2297 Papaver somniferum HOM05D007068 ORTHO05D008590 1.2e-43 181.8 465 33.5
Hma1.2p1_0669F.1_g200130 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 1.5e-43 181.4 483 37.1
Nn3g18277 Nelumbo nucifera HOM05D007068 ORTHO05D008590 2.0e-43 181.0 502 33.3
QL10p029594 Quercus lobata HOM05D007068 ORTHO05D008590 2.0e-43 181.0 399 35.6
A06p04350 Brassica napus HOM05D007068 ORTHO05D008590 5.8e-43 179.5 459 34.0
Carub.0001s3769 Capsella rubella HOM05D007068 ORTHO05D008590 5.8e-43 179.5 483 32.3
FvH4_5g17330 Fragaria vesca HOM05D007068 ORTHO05D008590 4.9e-42 176.4 459 33.3
FAN18G2889 Fragaria x ananassa HOM05D007068 ORTHO05D008590 4.9e-42 176.4 459 33.3
PSO017G3869 Papaver somniferum HOM05D007068 ORTHO05D008590 4.9e-42 176.4 468 33.1
Aqoxy3G00060 Aquilegia oxysepala HOM05D007068 ORTHO05D008590 6.4e-42 176.0 479 32.4
ECA238G2622 Erigeron canadensis HOM05D007068 ORTHO05D008590 8.4e-42 175.6 444 33.3
BcaC08g43059 Brassica carinata HOM05D007068 ORTHO05D008590 1.1e-41 175.3 480 32.5
BolC6t35436H Brassica oleracea HOM05D007068 ORTHO05D008590 1.1e-41 175.3 480 32.5
CARHR038180 Cardamine hirsuta HOM05D007068 ORTHO05D008590 1.1e-41 175.3 468 33.1
BcaB07g33743 Brassica carinata HOM05D007068 ORTHO05D008590 1.4e-41 174.9 475 32.4
Psat7g003560 Pisum sativum HOM05D007068 ORTHO05D008590 1.4e-41 174.9 454 32.4
Lj4g0019727 Lotus japonicus HOM05D007068 ORTHO05D008590 3.2e-41 173.7 453 31.1
Prupe.5G233500 Prunus persica HOM05D007068 ORTHO05D008590 3.2e-41 173.7 485 32.0
Medtr8g107330 Medicago truncatula HOM05D007068 ORTHO05D008590 5.4e-41 172.9 454 32.4
Thhalv10011472m.g Eutrema salsugineum HOM05D007068 ORTHO05D008590 7.1e-41 172.6 474 31.4
Sabra12G0033000 Salix brachista HOM05D007068 ORTHO05D008590 7.1e-41 172.6 503 33.2
AT1G48580 Arabidopsis thaliana HOM05D007068 ORTHO05D008590 1.2e-40 171.8 485 31.5
Sp1g35530 Schrenkiella parvula HOM05D007068 ORTHO05D008590 1.6e-40 171.4 469 32.6
DCAR_014504 Daucus carota HOM05D007068 ORTHO05D008590 3.5e-40 170.2 459 32.0
Lalb_Chr16g0386991 Lupinus albus HOM05D007068 ORTHO05D008590 5.1e-39 166.4 471 33.1
arahy.Tifrunner.gnm1.ann1.N01HH5 Arachis hypogaea HOM05D007068 ORTHO05D008590 6.6e-39 166.0 312 36.5
FAN13G0457 Fragaria x ananassa HOM05D007068 ORTHO05D008590 8.7e-39 165.6 463 33.5
Sopen03g037660 Solanum pennellii HOM05D007068 ORTHO05D008590 1.5e-38 164.9 201 50.2
VMungo0251G0101 Vigna mungo HOM05D007068 ORTHO05D008590 1.6e-37 161.4 468 31.6
BraA06t23639Z Brassica rapa HOM05D007068 ORTHO05D008590 2.8e-37 160.6 489 31.1
TPR.G1401 Trifolium pratense HOM05D007068 ORTHO05D008590 1.4e-36 158.3 403 33.0
FAN04G2769 Fragaria x ananassa HOM05D007068 ORTHO05D008590 2.4e-36 157.5 456 32.0
arahy.Tifrunner.gnm1.ann1.ZH8P6D Arachis hypogaea HOM05D007068 ORTHO05D008590 1.2e-35 155.2 261 43.3
MD06G1227000 Malus domestica HOM05D007068 ORTHO05D008590 7.6e-35 152.5 304 39.5
Phvul.002G330100 Phaseolus vulgaris HOM05D007068 ORTHO05D008590 5.4e-33 146.4 476 28.8
Cpa.g.sc3.397 Carica papaya HOM05D007068 ORTHO05D008590 1.0e-31 142.1 454 31.3
MBI13_g47078_MAGBIO Magnolia biondii HOM05D007068 ORTHO05D008590 2.3e-31 141.0 265 41.9
HPP92_002012 Vanilla planifolia HOM05D007068 ORTHO05D008590 2.3e-31 141.0 473 29.2
Glyma.08G054400 Glycine max HOM05D007068 ORTHO05D008590 1.5e-30 138.3 464 30.8
unitig_8.g4506 Utricularia gibba HOM05D007068 ORTHO05D008590 4.0e-28 130.2 464 29.7
EL10Ac4g08480 Beta vulgaris HOM05D007068 ORTHO05D008590 1.5e-27 128.3 238 39.1
AUR62037972 Chenopodium quinoa HOM05D007068 ORTHO05D008590 6.5e-26 122.9 154 50.0
Ah.06g187490 Amaranthus hybridus HOM05D007068 ORTHO05D008590 1.4e-25 121.7 235 37.0
CDE02G3810 Ceratophyllum demersum HOM05D007068 ORTHO05D008590 1.2e-24 118.6 255 35.3
Sc10g0009180 Simmondsia chinensis HOM05D007068 ORTHO05D008590 3.5e-24 117.1 277 34.7
Hund10357 Selenicereus undatus HOM05D007068 ORTHO05D008590 1.8e-23 114.8 235 39.6
ATR0618G302 Amborella trichopoda HOM05D007068 ORTHO05D008590 8.2e-21 105.9 193 35.8
VMungo0251G0567 Vigna mungo HOM05D007068 ORTHO05D008590 6.5e-18 96.3 272 27.9
HanXRQChr14g0431751 Helianthus annuus HOM05D007068 ORTHO05D008590 4.2e-17 93.6 79 60.8
Mapoly0060s0110 Marchantia polymorpha HOM05D007068 ORTHO05D008590 5.5e-17 93.2 240 31.7
SEGI_36605 Sequoiadendron giganteum HOM05D007068 ORTHO05D008590 1.6e-16 91.7 99 47.5
Ciclev10008793m.g Citrus clementina HOM05D007068 ORTHO05D008590 3.5e-16 90.5 243 31.3
SMO164G0186 Selaginella moellendorffii HOM05D007068 ORTHO05D008590 7.9e-16 89.4 176 35.2
SMO164G0105 Selaginella moellendorffii HOM05D020476 ORTHO05D008590 1.1e-14 85.5 179 34.1
Zm00001eb304630 Zea mays HOM05D007068 ORTHO05D008590 3.4e-11 73.9 249 28.1
vmacro17572 Vaccinium macrocarpon HOM05D007068 ORTHO05D008590 4.5e-11 73.6 83 49.4
Pp3c3_22100 Physcomitrium patens HOM05D007068 ORTHO05D008590 5.0e-10 70.1 183 31.1
Pp3c3_22103 Physcomitrium patens HOM05D007068 ORTHO05D008590 5.0e-10 70.1 183 31.1
AagrBONN_evm.TU.Sc2ySwM_362.2609 Anthoceros agrestis HOM05D007068 ORTHO05D008590 8.5e-10 69.3 145 33.8
FAN08G2700 Fragaria x ananassa HOM05D007068 ORTHO05D008590 3.2e-09 67.4 131 37.4
VMungo1215G1321 Vigna mungo HOM05D007068 ORTHO05D008590 3.0e-07 60.8 69 44.9
CBR_g21755 Chara braunii HOM05D007068 ORTHO05D008590 1.1e-06 58.9 165 33.3
arahy.Tifrunner.gnm1.ann1.USF1F6 Arachis hypogaea HOM05D007068 ORTHO05D008590 1.5e-06 58.5 56 48.2


User provided reference genes

Program Settings