Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g06200 Coffea canephora HOM05D006919 ORTHO05D008705 6.9e-179 630.6 325 100.0
Migut.D01529 Erythranthe guttata HOM05D006919 ORTHO05D008705 6.7e-134 481.1 323 73.4
Dinv08205 Davidia involucrata HOM05D006919 ORTHO05D008705 1.1e-133 480.3 325 73.5
Actinidia18895 Actinidia chinensis HOM05D006919 ORTHO05D008705 4.4e-133 478.4 325 72.6
Migut.D01538 Erythranthe guttata HOM05D006919 ORTHO05D008705 4.4e-133 478.4 323 73.4
CAN.G843.52 Capsicum annuum HOM05D006919 ORTHO05D008705 5.3e-131 471.5 325 72.9
Sopen03g037620 Solanum pennellii HOM05D006919 ORTHO05D008705 7.7e-130 467.6 325 71.7
PGSC0003DMG402005674 Solanum tuberosum HOM05D006919 ORTHO05D008705 7.7e-130 467.6 325 71.7
CSS0007871 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 3.2e-128 462.2 327 71.6
CANSAT80G0223 Cannabis sativa HOM05D006919 ORTHO05D008705 3.6e-127 458.8 325 70.2
TAR629G0573 Trochodendron aralioides HOM05D006919 ORTHO05D008705 1.8e-126 456.4 325 70.2
MSTRG.9306 Avicennia marina HOM05D006919 ORTHO05D008705 2.3e-126 456.1 322 71.7
Gohir.D07G064700 Gossypium hirsutum HOM05D006919 ORTHO05D008705 1.3e-124 450.3 322 69.3
Phvul.004G150300 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 1.7e-124 449.9 325 70.2
arahy.Tifrunner.gnm1.ann1.CTKR59 Arachis hypogaea HOM05D006919 ORTHO05D008705 2.2e-124 449.5 325 70.5
Oeu026273.1 Olea europaea HOM05D006919 ORTHO05D008705 2.8e-124 449.1 310 71.3
Gohir.A07G060000 Gossypium hirsutum HOM05D006919 ORTHO05D008705 3.7e-124 448.7 322 69.3
Gorai.001G068200 Gossypium raimondii HOM05D006919 ORTHO05D008705 4.8e-124 448.4 322 69.3
COL.COLO4_04912 Corchorus olitorius HOM05D006919 ORTHO05D008705 6.3e-124 448.0 323 67.8
TPR.G8644 Trifolium pratense HOM05D006919 ORTHO05D008705 8.2e-124 447.6 322 70.5
Potri.015G037600 Populus trichocarpa HOM05D006919 ORTHO05D008705 1.1e-123 447.2 323 67.5
Phvul.004G149400 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 1.4e-123 446.8 325 69.5
AUR62020416 Chenopodium quinoa HOM05D006919 ORTHO05D008705 2.4e-123 446.0 323 70.0
Solyc03g118660.3 Solanum lycopersicum HOM05D006919 ORTHO05D008705 2.4e-123 446.0 311 70.4
Psat1g030800 Pisum sativum HOM05D006919 ORTHO05D008705 5.3e-123 444.9 322 69.3
QL10p029823 Quercus lobata HOM05D006919 ORTHO05D008705 5.3e-123 444.9 324 67.6
Atru.chr9.1714 Acer truncatum HOM05D006919 ORTHO05D008705 7.0e-123 444.5 324 66.7
Duzib205G1348 Durio zibethinus HOM05D006919 ORTHO05D008705 7.0e-123 444.5 320 68.1
Atru.chr9.1680 Acer truncatum HOM05D006919 ORTHO05D008705 9.1e-123 444.1 327 66.4
Medtr6g069620 Medicago truncatula HOM05D006919 ORTHO05D008705 9.1e-123 444.1 322 70.5
Prupe.5G234100 Prunus persica HOM05D006919 ORTHO05D008705 9.1e-123 444.1 325 67.7
CiPaw.15G143800 Carya illinoinensis HOM05D006919 ORTHO05D008705 1.2e-122 443.7 325 68.0
MD06G1227700 Malus domestica HOM05D006919 ORTHO05D008705 1.2e-122 443.7 325 66.5
Thecc.03G055400 Theobroma cacao HOM05D006919 ORTHO05D008705 2.0e-122 443.0 320 68.4
Glyma.07G102800 Glycine max HOM05D006919 ORTHO05D008705 3.5e-122 442.2 328 68.0
Lalb_Chr24g0398171 Lupinus albus HOM05D006919 ORTHO05D008705 3.5e-122 442.2 325 67.7
Nn4g24311 Nelumbo nucifera HOM05D006919 ORTHO05D008705 5.9e-122 441.4 325 67.1
PGR083G2730 Punica granatum HOM05D006919 ORTHO05D008705 5.0e-121 438.3 324 65.4
CsaV3_1G007200 Cucumis sativus L. HOM05D006919 ORTHO05D008705 2.5e-120 436.0 320 67.2
GSVIVG01008449001 Vitis vinifera HOM05D006919 ORTHO05D008705 2.5e-120 436.0 325 68.6
Aa31LG10G5250 Aethionema arabicum HOM05D006919 ORTHO05D008705 4.2e-120 435.3 324 66.4
Carub.0001s3766 Capsella rubella HOM05D006919 ORTHO05D008705 4.2e-120 435.3 323 66.6
Sp1g35490 Schrenkiella parvula HOM05D006919 ORTHO05D008705 5.5e-120 434.9 323 66.3
THA.LOC104820349 Tarenaya hassleriana HOM05D006919 ORTHO05D008705 7.2e-120 434.5 324 67.6
RcHm_v2.0_Chr7g0178261 Rosa chinensis HOM05D006919 ORTHO05D008705 1.6e-119 433.3 325 65.8
ECA233G0189 Erigeron canadensis HOM05D006919 ORTHO05D008705 2.1e-119 433.0 321 67.0
TWI81G0447 Tripterygium wilfordii HOM05D006919 ORTHO05D008705 2.7e-119 432.6 325 67.1
Lj2g0027212 Lotus japonicus HOM05D006919 ORTHO05D008705 3.6e-119 432.2 311 69.5
HanXRQChr05g0142681 Helianthus annuus HOM05D006919 ORTHO05D008705 6.1e-119 431.4 325 67.7
BcaB07g33748 Brassica carinata HOM05D006919 ORTHO05D008705 1.4e-118 430.3 323 66.3
C06p03070 Brassica napus HOM05D006919 ORTHO05D008705 1.4e-118 430.3 323 66.6
BolC6t35427H Brassica oleracea HOM05D006919 ORTHO05D008705 1.4e-118 430.3 323 66.6
FvH4_5g17430 Fragaria vesca HOM05D006919 ORTHO05D008705 1.8e-118 429.9 326 66.3
Aqoxy3G04092 Aquilegia oxysepala HOM05D006919 ORTHO05D008705 4.0e-118 428.7 322 66.1
AL1G55190 Arabidopsis lyrata HOM05D006919 ORTHO05D008705 4.0e-118 428.7 323 65.3
AT1G48550 Arabidopsis thaliana HOM05D006919 ORTHO05D008705 6.8e-118 427.9 323 65.0
A06p04410 Brassica napus HOM05D006919 ORTHO05D008705 8.8e-118 427.6 323 65.6
arahy.Tifrunner.gnm1.ann1.95HZXM Arachis hypogaea HOM05D006919 ORTHO05D008705 2.0e-117 426.4 368 62.0
BraA06t23646Z Brassica rapa HOM05D006919 ORTHO05D008705 4.4e-117 425.2 325 65.8
Thhalv10012210m.g Eutrema salsugineum HOM05D006919 ORTHO05D008705 4.4e-117 425.2 323 65.0
PSO063G3076 Papaver somniferum HOM05D006919 ORTHO05D008705 9.8e-117 424.1 325 66.8
BcaC08g43045 Brassica carinata HOM05D006919 ORTHO05D008705 2.8e-116 422.5 329 65.0
VMungo0464G0753 Vigna mungo HOM05D006919 ORTHO05D008705 2.4e-115 419.5 325 66.2
Hund01978 Selenicereus undatus HOM05D006919 ORTHO05D008705 3.1e-115 419.1 316 65.5
Lsat_1_v5_gn_8_720 Lactuca sativa HOM05D006919 ORTHO05D008705 4.1e-115 418.7 310 66.1
CSS0013537 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 9.1e-115 417.5 327 67.3
AUR62015799 Chenopodium quinoa HOM05D006919 ORTHO05D008705 1.2e-114 417.2 307 68.7
FAN13G2797 Fragaria x ananassa HOM05D006919 ORTHO05D008705 1.2e-114 417.2 313 65.8
Sed0003421 Sechium edule HOM05D006919 ORTHO05D008705 1.6e-114 416.8 311 66.9
FAN08G0969 Fragaria x ananassa HOM05D006919 ORTHO05D008705 2.9e-113 412.5 313 65.2
Cpa.g.sc3.392 Carica papaya HOM05D006919 ORTHO05D008705 2.5e-112 409.5 341 61.0
FAN04G0116 Fragaria x ananassa HOM05D006919 ORTHO05D008705 2.7e-111 406.0 314 64.6
Nitab4.5_0013135g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 3.6e-111 405.6 277 71.5
PSO754G0044 Papaver somniferum HOM05D006919 ORTHO05D008705 1.0e-110 404.1 325 63.1
ATR1100G039 Amborella trichopoda HOM05D006919 ORTHO05D008705 8.3e-108 394.4 324 59.0
arahy.Tifrunner.gnm1.ann1.2R737Y Arachis hypogaea HOM05D006919 ORTHO05D008705 2.0e-106 389.8 325 64.3
Manes.06G005400 Manihot esculenta HOM05D006919 ORTHO05D008705 8.6e-105 384.4 276 68.1
EL10Ac4g07782 Beta vulgaris HOM05D006919 ORTHO05D008705 5.6e-104 381.7 325 61.8
QL10p030230 Quercus lobata HOM05D006919 ORTHO05D008705 9.5e-104 380.9 305 63.6
Ciclev10010588m.g Citrus clementina HOM05D006919 ORTHO05D008705 2.1e-103 379.8 319 60.8
FAN18G1663 Fragaria x ananassa HOM05D006919 ORTHO05D008705 3.0e-102 375.9 313 61.3
arahy.Tifrunner.gnm1.ann1.54PB3V Arachis hypogaea HOM05D006919 ORTHO05D008705 7.5e-101 371.3 346 59.8
Peaxi162Scf00314g00331 Petunia axillaris HOM05D006919 ORTHO05D008705 1.7e-97 360.1 252 68.3
Ca_25336_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 1.4e-94 350.5 274 66.1
Ca_29640_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 1.4e-94 350.5 274 66.1
ClCG04G010590 Citrullus lanatus HOM05D006919 ORTHO05D008705 1.7e-92 343.6 322 56.2
HPP92_023812 Vanilla planifolia HOM05D006919 ORTHO05D008705 3.2e-91 339.3 323 56.3
MELO3C002137.2 Cucumis melo HOM05D006919 ORTHO05D008705 1.2e-90 337.4 262 64.1
Nitab4.5_0012026g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 3.4e-85 319.3 225 69.3
Mapoly0012s0164 Marchantia polymorpha HOM05D006919 ORTHO05D008705 5.8e-85 318.5 330 47.6
AagrBONN_evm.TU.Sc2ySwM_344.2286 Anthoceros agrestis HOM05D006919 ORTHO05D008705 4.1e-83 312.4 322 47.2
vmacro16410 Vaccinium macrocarpon HOM05D006919 ORTHO05D008705 9.2e-83 311.2 261 60.5
Eucgr.B00878 Eucalyptus grandis HOM05D006919 ORTHO05D008705 2.1e-82 310.1 235 64.3
Pp3c2_29770 Physcomitrium patens HOM05D006919 ORTHO05D008705 9.5e-80 301.2 322 47.8
Pp3c1_6570 Physcomitrium patens HOM05D006919 ORTHO05D008705 1.8e-78 297.0 322 47.8
MBI09_g15241_MAGBIO Magnolia biondii HOM05D006919 ORTHO05D008705 1.0e-73 281.2 220 62.7
CDE08G0345 Ceratophyllum demersum HOM05D006919 ORTHO05D008705 1.6e-71 273.9 323 48.0
CARHR038160 Cardamine hirsuta HOM05D006919 ORTHO05D008705 3.1e-70 269.6 208 61.5
AagrBONN_evm.TU.Sc2ySwM_228.5103 Anthoceros agrestis HOM05D006919 ORTHO05D008705 3.8e-68 262.7 316 42.1
Glyma.U031615 Glycine max HOM05D006919 ORTHO05D008705 7.1e-67 258.5 185 67.0
Eucgr.B00996 Eucalyptus grandis HOM05D006919 ORTHO05D008705 7.3e-64 248.4 235 53.6
SMO143G0218 Selaginella moellendorffii HOM05D006919 ORTHO05D008705 3.6e-63 246.1 275 48.7
Haze_18872 Corylus avellana HOM05D006919 ORTHO05D008705 6.9e-62 241.9 339 43.4
CBR_g44935 Chara braunii HOM05D006919 ORTHO05D008705 7.4e-56 221.9 346 37.9
Cfa019651 Carpinus fangiana HOM05D006919 ORTHO05D008705 7.6e-53 211.8 150 67.3
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 4.5e-45 186.0 231 47.2
RcHm_v2.0_Chr5g0035741 Rosa chinensis HOM05D006919 ORTHO05D008705 2.5e-43 180.3 127 63.8
RcHm_v2.0_Chr7g0224581 Rosa chinensis HOM05D006919 ORTHO05D008705 7.4e-40 168.7 132 60.6
arahy.Tifrunner.gnm1.ann1.248BIT Arachis hypogaea HOM05D006919 ORTHO05D008705 2.8e-31 140.2 107 66.4
Lj9A419G30 Lonicera japonica HOM05D006919 ORTHO05D008705 8.2e-31 138.7 251 35.5
Lj9C419T19 Lonicera japonica HOM05D006919 ORTHO05D008705 5.7e-24 115.9 73 84.9
SEGI_02358 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 3.7e-23 113.2 94 58.5
RcHm_v2.0_Chr7g0212051 Rosa chinensis HOM05D006919 ORTHO05D008705 4.8e-23 112.8 91 62.6
CBR_g74660 Chara braunii HOM05D006919 ORTHO05D008705 1.3e-20 104.8 219 34.7
SEGI_39350 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 1.6e-10 71.2 75 50.7
CSS0046000 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D004872 4.8e-07 59.7 43 69.8


User provided reference genes

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