Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 2.1e-194 682.2 342 100.0
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 3.2e-134 482.3 351 70.4
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 1.3e-132 476.9 338 69.8
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 2.4e-126 456.1 363 65.6
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 2.1e-125 453.0 344 68.0
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 4.6e-125 451.8 346 65.0
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 1.5e-123 446.8 344 66.0
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 1.9e-123 446.4 358 63.1
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 2.5e-123 446.0 342 68.4
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 3.3e-123 445.7 348 65.5
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 9.6e-123 444.1 351 65.0
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 9.0e-121 437.6 343 66.5
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 2.0e-120 436.4 354 62.7
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 7.6e-120 434.5 354 62.1
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 1.7e-119 433.3 325 67.1
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 3.8e-119 432.2 352 62.5
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 4.9e-119 431.8 345 64.3
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 1.6e-117 426.8 342 66.4
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 3.5e-117 425.6 342 65.2
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 6.0e-117 424.9 342 65.2
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 6.0e-117 424.9 356 62.1
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 6.0e-117 424.9 359 64.3
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 6.0e-117 424.9 361 60.7
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 6.7e-116 421.4 331 62.8
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 1.5e-115 420.2 348 62.1
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 2.5e-115 419.5 303 67.3
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 5.6e-115 418.3 309 66.0
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 7.4e-115 417.9 346 63.6
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 7.4e-115 417.9 346 62.7
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 9.6e-115 417.5 342 64.6
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 1.6e-114 416.8 349 61.0
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 2.1e-114 416.4 347 62.5
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 2.1e-114 416.4 341 61.6
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.8e-114 416.0 344 61.6
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 2.8e-114 416.0 331 64.0
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 4.8e-114 415.2 284 70.8
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 1.4e-113 413.7 317 64.7
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 1.8e-113 413.3 348 60.9
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 1.8e-113 413.3 348 60.9
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 1.8e-113 413.3 317 64.4
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 1.8e-113 413.3 349 61.9
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 2.4e-113 412.9 347 60.2
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 2.4e-113 412.9 290 67.2
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 5.3e-113 411.8 310 63.9
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 9.0e-113 411.0 348 61.2
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 9.0e-113 411.0 306 64.7
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 9.0e-113 411.0 319 63.6
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 9.0e-113 411.0 325 63.4
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 1.2e-112 410.6 341 62.8
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 1.5e-112 410.2 328 62.8
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 1.5e-112 410.2 353 59.8
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 1.5e-112 410.2 308 66.6
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 3.4e-112 409.1 353 59.8
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 5.8e-112 408.3 351 60.7
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 2.2e-111 406.4 312 63.8
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 3.8e-111 405.6 352 60.2
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 4.9e-111 405.2 352 59.9
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 8.4e-111 404.4 322 62.7
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 1.4e-110 403.7 314 64.6
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.4e-110 403.7 290 66.6
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 1.4e-110 403.7 350 61.1
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 1.4e-110 403.7 366 59.8
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 1.4e-110 403.7 357 59.7
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 2.4e-110 402.9 347 62.2
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 5.5e-110 401.7 356 58.7
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 7.1e-110 401.4 344 59.6
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 1.2e-109 400.6 310 64.2
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 1.2e-109 400.6 287 65.9
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 3.5e-109 399.1 358 58.4
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 3.5e-109 399.1 372 56.2
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 4.6e-109 398.7 298 64.8
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 6.0e-109 398.3 311 62.7
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 6.0e-109 398.3 312 63.8
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 6.0e-109 398.3 312 63.8
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 2.3e-108 396.4 353 59.5
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 2.3e-108 396.4 355 59.4
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 3.9e-108 395.6 280 67.1
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 5.1e-108 395.2 341 58.4
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 6.7e-108 394.8 354 58.2
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.5e-107 393.7 290 64.1
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.3e-106 390.6 339 61.7
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 1.5e-104 383.6 325 59.4
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 3.4e-104 382.5 352 55.7
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 5.8e-104 381.7 256 71.9
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 2.2e-103 379.8 350 58.3
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 8.4e-103 377.9 353 58.6
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.4e-102 377.1 323 59.8
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 4.2e-102 375.6 259 68.0
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 3.5e-101 372.5 244 72.1
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 6.0e-101 371.7 320 59.1
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 7.9e-101 371.3 306 60.5
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 5.7e-99 365.2 329 58.7
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 7.4e-99 364.8 258 68.2
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 1.6e-98 363.6 287 61.7
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 1.4e-97 360.5 253 67.6
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 1.2e-96 357.5 245 68.6
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 2.6e-96 356.3 294 62.2
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 3.4e-96 355.9 342 57.3
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 1.9e-94 350.1 354 55.4
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 1.9e-94 350.1 225 72.4
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 3.0e-92 342.8 350 53.7
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 8.8e-92 341.3 254 65.7
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 2.4e-89 333.2 239 64.4
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 9.4e-86 321.2 220 69.5
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 1.0e-84 317.8 255 62.0
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 1.3e-82 310.8 404 45.3
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 2.0e-80 303.5 222 64.9
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 5.9e-72 275.4 198 68.2
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 7.5e-67 258.5 297 43.8
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 9.1e-65 251.5 291 45.0
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 5.9e-64 248.8 177 68.4
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 1.1e-62 244.6 330 41.8
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 2.1e-61 240.4 299 46.2
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 1.0e-60 238.0 320 40.6
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 3.0e-60 236.5 231 57.1
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 5.7e-59 232.3 297 43.8
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 7.7e-56 221.9 244 48.0
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 9.5e-54 214.9 268 42.9
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 8.3e-50 201.8 176 57.4
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 1.0e-47 194.9 257 42.0
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 3.8e-47 193.0 391 32.7
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 5.0e-47 192.6 157 58.6
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 3.3e-46 189.9 331 37.8
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 3.0e-44 183.3 311 37.9
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 9.2e-41 171.8 130 61.5
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 7.3e-38 162.2 235 38.3
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 6.2e-37 159.1 161 55.9
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 8.0e-37 158.7 321 30.2
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 1.4e-36 157.9 92 73.9
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.8e-36 157.5 151 60.9
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 4.6e-32 142.9 150 50.0
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 4.3e-30 136.3 109 57.8
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 2.5e-22 110.5 342 25.7
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 1.9e-17 94.4 222 32.4
MCO16G342 Micromonas commoda HOM05D005585 ORTHO05D006905 2.3e-15 87.4 232 27.6
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 4.2e-09 66.6 72 51.4


User provided reference genes

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