Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 0.0e+00 1128.6 604 100.0
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 2.2e-202 709.5 614 68.7
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.6e-200 702.6 600 62.8
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 5.9e-200 701.4 606 61.2
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 7.7e-200 701.0 600 62.3
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 7.7e-200 701.0 553 64.6
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 2.9e-199 699.1 553 64.2
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.3e-195 685.6 593 61.6
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.0e-191 674.1 595 59.7
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 8.5e-191 671.0 593 59.5
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.9e-190 669.8 553 62.6
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 2.7e-189 666.0 606 61.2
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 3.6e-189 665.6 552 61.4
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 2.0e-187 659.8 552 61.2
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 5.7e-187 658.3 551 62.4
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 2.2e-186 656.4 592 58.8
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 2.8e-186 656.0 598 60.0
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 1.4e-185 653.7 552 60.3
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 2.4e-185 652.9 555 62.2
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 5.3e-185 651.7 553 60.4
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 5.3e-185 651.7 562 59.3
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 7.7e-184 647.9 554 60.8
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.0e-183 647.5 594 58.4
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 3.8e-183 645.6 558 60.0
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 3.8e-183 645.6 552 60.3
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.0e-183 645.2 552 61.8
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 6.5e-183 644.8 555 59.5
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.9e-182 643.3 552 61.8
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 3.2e-182 642.5 553 61.7
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 1.2e-181 640.6 594 57.7
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.2e-181 640.6 595 57.5
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 6.1e-181 638.3 554 60.8
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 8.0e-181 637.9 556 59.2
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 1.8e-180 636.7 552 60.5
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.8e-180 636.7 552 60.5
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.8e-180 636.7 543 62.1
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 2.3e-180 636.3 618 57.6
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 4.0e-180 635.6 534 63.3
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 3.4e-179 632.5 557 59.2
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 5.7e-179 631.7 555 59.3
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 9.8e-179 630.9 553 59.3
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.7e-178 629.0 552 59.8
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 3.7e-178 629.0 595 56.6
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 4.8e-178 628.6 528 62.3
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 6.3e-178 628.2 595 56.8
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 8.3e-178 627.9 638 53.4
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 3.1e-177 625.9 576 56.9
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 4.1e-177 625.5 555 59.8
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 7.7e-176 621.3 552 59.4
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 4.2e-174 615.5 555 59.1
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 2.1e-173 613.2 555 58.7
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 2.8e-173 612.8 554 58.5
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 3.6e-173 612.5 515 61.2
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 1.0e-172 610.9 553 57.1
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.8e-172 610.1 555 57.7
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 2.3e-172 609.8 617 54.6
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.3e-172 609.8 593 55.0
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 2.3e-172 609.8 557 58.7
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 3.0e-172 609.4 551 60.3
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 5.2e-172 608.6 553 57.3
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 6.8e-172 608.2 596 55.9
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 2.6e-171 606.3 532 58.8
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 4.4e-171 605.5 599 56.3
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 1.1e-169 600.9 558 57.2
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 4.1e-169 599.0 552 56.0
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.7e-168 596.3 564 56.7
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 7.8e-168 594.7 553 57.5
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.9e-167 592.8 553 57.9
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.5e-166 589.7 595 54.3
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 3.3e-166 589.3 553 57.5
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.2e-165 587.4 626 54.2
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.2e-165 587.4 591 54.7
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.6e-165 587.0 598 54.2
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 6.1e-165 585.1 568 55.8
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 8.0e-165 584.7 552 57.6
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 8.0e-165 584.7 588 54.6
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 2.6e-163 579.7 464 64.9
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 3.4e-163 579.3 552 57.1
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 3.4e-163 579.3 688 51.6
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 9.8e-163 577.8 560 59.1
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 3.7e-162 575.9 628 51.4
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.7e-162 575.9 552 55.3
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.4e-161 573.9 552 56.9
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 5.4e-161 572.0 554 55.6
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 6.6e-159 565.1 552 54.3
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.1e-158 564.3 554 55.4
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 1.1e-158 564.3 552 55.3
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.5e-158 563.9 552 56.3
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.9e-158 563.5 552 56.0
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 7.3e-158 561.6 552 55.1
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 9.5e-158 561.2 552 55.6
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.6e-157 560.5 368 72.0
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.1e-157 560.1 556 55.4
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.6e-157 559.3 476 60.1
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 3.6e-157 559.3 555 54.6
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 8.0e-157 558.1 552 55.6
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.1e-156 556.2 476 59.7
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.5e-155 553.9 551 53.9
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 2.6e-155 553.1 555 55.0
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 2.6e-155 553.1 553 53.9
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 1.6e-152 543.9 592 50.5
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 7.3e-150 535.0 370 68.9
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 1.3e-146 524.2 552 52.4
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 6.4e-146 521.9 529 52.2
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 4.1e-145 519.2 394 64.5
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 1.6e-141 507.3 555 50.6
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 2.8e-141 506.5 566 49.3
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 2.1e-136 490.3 603 47.3
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.7e-136 490.0 557 48.7
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 7.8e-136 488.4 300 76.0
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 5.6e-134 482.3 417 56.4
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.6e-133 480.7 343 66.5
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.1e-132 478.0 553 46.8
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.0e-131 473.8 475 54.3
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.8e-131 472.2 552 48.9
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 2.4e-129 466.8 554 49.6
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 3.2e-129 466.5 553 47.6
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 2.1e-128 463.8 473 51.0
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 2.4e-124 450.3 338 65.1
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 5.8e-123 445.7 513 51.7
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 6.0e-120 435.6 350 58.6
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.8e-119 434.1 449 51.7
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 6.7e-119 432.2 267 75.3
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.7e-117 426.4 450 51.6
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 5.3e-116 422.5 382 53.4
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.4e-115 419.9 619 40.9
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 5.8e-115 419.1 384 52.6
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 6.4e-114 415.6 398 51.8
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 3.2e-113 413.3 502 46.8
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 5.5e-113 412.5 609 38.9
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 9.3e-113 411.8 540 43.7
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 9.3e-113 411.8 571 41.3
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.7e-112 410.2 531 45.6
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 6.0e-112 409.1 571 41.0
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.3e-111 407.1 375 53.3
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 6.7e-111 405.6 542 42.1
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 6.7e-111 405.6 538 43.5
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 6.7e-111 405.6 476 47.1
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.3e-110 403.3 281 66.2
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.6e-109 401.0 590 39.0
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 1.8e-103 380.9 315 61.6
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 2.3e-103 380.6 567 39.3
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 2.3e-103 380.6 567 39.3
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 6.7e-103 379.0 446 45.3
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.9e-102 377.5 301 56.5
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 1.6e-101 374.4 571 39.4
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 1.6e-101 374.4 571 39.4
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 8.8e-95 352.1 225 70.7
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.2e-90 337.4 207 76.3
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.2e-88 331.6 207 75.4
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 3.6e-88 330.1 403 48.6
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 8.2e-85 318.9 326 56.7
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 5.9e-83 312.8 298 51.3
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 2.1e-80 304.3 598 37.6
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 1.1e-73 282.0 331 50.2
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 3.2e-73 280.4 616 37.3
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.5e-57 228.4 451 36.4
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 2.0e-54 218.0 312 44.2
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 2.0e-51 208.0 163 59.5
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 2.1e-48 198.0 123 73.2
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.1e-47 194.1 325 42.2
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.6e-40 170.6 102 75.5
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.1e-39 169.1 270 35.6
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 3.1e-39 167.5 133 60.9
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 7.8e-35 152.9 83 83.1
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 1.9e-28 131.7 69 87.0
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.2e-27 129.0 82 74.4
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 2.1e-27 128.3 106 54.7
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 2.5e-25 121.3 65 86.2
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 4.7e-24 117.1 94 59.6
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 3.6e-16 90.9 271 31.4
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 4.8e-16 90.5 257 30.4
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.9e-13 81.3 308 32.1
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 8.1e-08 63.2 148 31.8


User provided reference genes

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