Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 2.0e-163 578.9 280 100.0
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.9e-138 495.0 259 86.5
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 5.1e-138 494.6 259 86.1
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 1.5e-137 493.0 255 87.8
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 4.7e-136 488.0 260 85.8
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 6.2e-136 487.6 260 84.2
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.8e-135 486.1 267 84.6
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 8.9e-135 483.8 268 83.6
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 8.9e-135 483.8 264 82.2
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.5e-134 483.0 260 84.6
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 5.8e-134 481.1 268 82.8
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 1.3e-133 479.9 268 82.1
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 2.2e-133 479.2 265 81.9
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 2.2e-133 479.2 268 82.1
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 6.4e-133 477.6 260 84.2
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 3.2e-132 475.3 257 84.4
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 4.2e-132 474.9 266 81.6
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 5.4e-132 474.6 264 82.2
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 7.1e-132 474.2 261 82.8
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 1.2e-131 473.4 263 82.9
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 1.6e-131 473.0 265 81.5
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 6.0e-131 471.1 260 82.3
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.3e-130 469.2 280 77.9
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 3.0e-130 468.8 260 82.7
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 5.1e-130 468.0 260 81.9
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 1.1e-129 466.8 261 80.1
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.5e-129 465.7 263 80.2
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 4.3e-129 464.9 268 79.9
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 1.3e-128 463.4 257 81.3
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 1.3e-128 463.4 260 79.2
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.3e-128 463.4 273 79.9
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 1.6e-128 463.0 268 79.1
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 1.6e-128 463.0 260 81.5
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 2.8e-128 462.2 260 78.5
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 3.6e-128 461.8 260 79.2
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 3.6e-128 461.8 264 79.9
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 3.6e-128 461.8 269 79.9
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 4.8e-128 461.5 268 79.5
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 1.8e-127 459.5 268 78.4
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 1.8e-127 459.5 260 77.3
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.8e-127 459.5 249 83.1
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.8e-127 459.5 259 81.5
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 2.4e-127 459.1 261 81.2
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 2.4e-127 459.1 252 82.1
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 3.1e-127 458.8 261 80.8
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 5.3e-127 458.0 260 81.5
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 6.9e-127 457.6 267 79.0
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.6e-126 455.7 253 81.4
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 5.8e-126 454.5 260 81.5
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.3e-125 453.4 260 76.9
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 1.7e-125 453.0 263 75.3
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 2.2e-125 452.6 261 77.0
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 2.2e-125 452.6 261 77.0
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 2.9e-125 452.2 269 78.4
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 2.9e-125 452.2 260 81.2
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 2.9e-125 452.2 262 82.4
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.4e-124 449.9 252 82.5
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.9e-124 449.5 252 82.5
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.9e-124 449.5 260 80.4
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 1.9e-124 449.5 262 78.6
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.4e-124 449.1 257 80.9
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 4.2e-124 448.4 253 81.0
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.2e-124 448.4 257 81.3
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 4.2e-124 448.4 258 81.8
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 7.1e-124 447.6 261 77.4
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 9.3e-124 447.2 252 82.1
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.2e-123 446.8 283 73.9
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 1.2e-123 446.8 283 73.9
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 2.7e-123 445.7 283 73.5
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 2.7e-123 445.7 253 79.8
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 2.7e-123 445.7 261 77.0
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 3.5e-123 445.3 282 73.4
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 4.6e-123 444.9 283 73.5
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 2.3e-122 442.6 283 73.1
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 3.9e-122 441.8 268 77.2
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 1.1e-121 440.3 268 76.1
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 3.3e-121 438.7 268 75.7
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 3.3e-121 438.7 268 75.4
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 3.3e-121 438.7 264 77.7
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.3e-121 438.7 256 78.5
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 3.3e-121 438.7 249 80.7
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 4.3e-121 438.3 260 74.6
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 1.3e-120 436.8 257 78.2
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 2.1e-120 436.0 281 73.3
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 2.1e-120 436.0 260 76.9
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 2.1e-120 436.0 261 77.0
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 2.1e-120 436.0 255 76.9
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 4.8e-120 434.9 246 80.5
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 4.8e-120 434.9 277 73.6
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 6.2e-120 434.5 268 75.4
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 8.1e-120 434.1 281 72.2
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 2.4e-119 432.6 259 77.2
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 3.4e-118 428.7 280 71.8
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.4e-116 423.3 283 71.0
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.9e-116 422.9 287 70.0
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.2e-116 422.2 275 71.3
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 9.3e-116 420.6 285 70.5
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.1e-115 419.5 234 81.6
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 4.6e-115 418.3 260 73.1
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.0e-114 417.2 259 74.9
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 1.0e-114 417.2 209 88.5
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.5e-113 413.3 253 73.1
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.5e-113 412.5 233 80.7
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 4.3e-113 411.8 305 65.6
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 4.3e-113 411.8 268 73.5
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 6.2e-112 407.9 215 86.5
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.1e-111 405.6 292 69.5
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 9.0e-111 404.1 231 76.2
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 4.5e-110 401.7 238 75.2
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 1.0e-109 400.6 283 69.6
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 3.8e-109 398.7 231 76.2
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 4.8e-104 381.7 216 78.2
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 6.2e-104 381.3 224 78.6
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 2.2e-101 372.9 233 70.0
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 8.4e-101 370.9 221 77.4
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.9e-100 369.8 227 69.2
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.6e-99 366.7 222 70.7
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 8.7e-98 360.9 218 71.6
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 5.7e-97 358.2 222 69.4
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 3.1e-95 352.4 192 80.7
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 6.9e-95 351.3 262 66.0
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.5e-94 350.1 288 61.8
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.5e-89 332.8 334 53.6
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 4.3e-89 332.0 231 68.0
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 4.8e-88 328.6 169 88.2
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.9e-85 319.3 274 58.8
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 9.4e-84 314.3 164 82.9
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 1.5e-81 307.0 215 59.5
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.6e-78 296.2 198 64.6
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 1.9e-76 290.0 162 80.2
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.9e-69 266.2 163 76.7
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 5.5e-68 261.9 168 73.2
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.2e-65 254.2 138 81.9
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 2.0e-62 243.4 199 61.8
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.7e-61 240.4 213 60.1
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 8.9e-50 201.4 118 76.3
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.4e-49 199.5 122 73.8
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 9.5e-36 154.8 104 69.2
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.1e-30 137.1 83 78.3
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 1.8e-26 124.0 80 72.5
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 8.9e-26 121.7 72 77.8
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 7.6e-25 118.6 68 67.6
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.9e-24 116.7 65 76.9
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 8.4e-24 115.2 64 82.8
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 3.5e-22 109.8 54 87.0
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 3.6e-19 99.8 90 55.6
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.2e-17 94.7 60 75.0
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 6.4e-16 89.0 89 55.1
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 1.2e-14 84.7 85 47.1
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 1.7e-13 80.9 43 72.1
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 3.3e-12 76.6 50 70.0
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 9.6e-12 75.1 52 67.3
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 8.1e-11 72.0 49 65.3
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.1e-10 71.6 49 65.3
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 9.0e-10 68.6 66 53.0
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 2.4e-07 60.5 159 28.9


User provided reference genes

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