Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 6.5e-102 374.0 182 100.0
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.0e-78 294.7 185 75.1
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 8.5e-78 293.9 185 74.6
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 2.1e-76 289.3 185 72.4
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 3.6e-76 288.5 185 72.4
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.8e-72 276.2 185 71.9
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 2.7e-71 272.3 185 71.4
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 1.7e-70 269.6 185 69.7
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 3.8e-70 268.5 185 74.1
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.1e-69 266.9 180 70.0
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 2.5e-69 265.8 185 70.8
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.2e-68 263.5 190 67.9
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 6.1e-68 261.2 185 69.2
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 2.0e-66 256.1 185 69.7
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 7.5e-66 254.2 183 68.9
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 9.8e-66 253.8 186 70.4
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.7e-65 253.1 185 67.6
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 4.9e-65 251.5 185 65.9
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 4.9e-65 251.5 182 70.9
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 6.3e-65 251.1 186 69.9
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 2.4e-64 249.2 181 65.7
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.4e-64 249.2 185 67.0
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.1e-64 248.8 186 67.2
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 5.4e-64 248.1 184 66.8
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 7.0e-64 247.7 186 67.2
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 9.2e-64 247.3 186 67.7
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.0e-63 246.1 186 67.2
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 2.0e-63 246.1 186 64.5
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.0e-62 243.8 189 63.5
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.0e-62 243.8 158 74.1
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 1.3e-62 243.4 187 66.3
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.3e-62 243.4 193 61.7
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.7e-62 243.0 182 67.0
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.9e-61 239.6 190 65.8
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.5e-61 239.2 191 62.3
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 5.6e-61 238.0 192 62.5
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 7.3e-61 237.7 173 64.2
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 7.3e-61 237.7 182 67.0
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 9.5e-61 237.3 223 57.8
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.6e-60 236.5 182 63.7
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.6e-60 236.5 154 73.4
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 2.8e-60 235.7 182 64.8
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 3.6e-60 235.3 182 65.4
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.0e-59 233.8 185 63.2
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.4e-59 233.4 186 61.8
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 1.4e-59 233.4 182 64.3
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 3.0e-59 232.3 179 62.6
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 5.2e-59 231.5 187 62.0
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 6.8e-59 231.1 182 63.7
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 6.8e-59 231.1 182 63.2
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 8.9e-59 230.7 182 62.1
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 8.9e-59 230.7 197 60.4
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 8.9e-59 230.7 182 63.2
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.2e-58 230.3 188 62.8
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 2.0e-58 229.6 182 63.2
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 2.0e-58 229.6 138 75.4
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.0e-58 229.6 182 65.9
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.6e-58 229.2 182 65.4
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 3.4e-58 228.8 195 59.5
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 3.4e-58 228.8 185 62.7
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 4.4e-58 228.4 183 62.3
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 4.4e-58 228.4 184 60.9
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 5.7e-58 228.0 184 62.5
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 5.7e-58 228.0 182 64.8
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 7.5e-58 227.6 185 62.7
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 7.5e-58 227.6 195 59.0
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 1.3e-57 226.9 224 55.4
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.3e-57 226.9 182 64.8
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 1.7e-57 226.5 144 72.9
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.7e-57 226.5 182 65.4
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.7e-57 226.5 188 63.3
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.2e-57 226.1 182 59.3
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 8.3e-57 224.2 192 60.4
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.1e-56 223.8 190 62.6
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.1e-56 223.8 188 61.2
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.4e-56 223.4 182 63.7
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 2.4e-56 222.6 194 60.8
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 3.2e-56 222.2 160 67.5
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 5.4e-56 221.5 179 59.8
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 7.0e-56 221.1 158 68.4
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 9.2e-56 220.7 182 61.0
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 3.5e-55 218.8 185 58.9
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 3.5e-55 218.8 190 58.9
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 3.5e-55 218.8 184 60.9
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.6e-55 218.4 187 61.0
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 5.9e-55 218.0 187 61.0
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 1.0e-54 217.2 184 58.2
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.3e-54 216.9 136 71.3
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.3e-54 216.1 186 58.1
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.0e-54 215.7 187 59.9
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 3.0e-54 215.7 186 59.7
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.0e-54 215.7 150 66.0
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 3.0e-54 215.7 185 57.8
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 6.6e-54 214.5 134 70.9
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 8.6e-54 214.2 136 70.6
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.1e-53 213.8 183 56.8
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.1e-53 213.8 185 58.4
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 2.5e-53 212.6 184 58.2
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 3.3e-53 212.2 186 57.5
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 4.3e-53 211.8 138 69.6
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 4.3e-53 211.8 185 56.2
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 5.6e-53 211.5 185 57.3
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.2e-52 210.3 182 59.3
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.6e-52 209.9 196 53.6
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 2.8e-52 209.1 136 69.1
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 4.7e-52 208.4 183 57.9
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 8.0e-52 207.6 186 56.5
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.4e-51 206.8 184 57.6
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 2.3e-51 206.1 149 65.8
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 2.3e-51 206.1 145 66.2
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 8.9e-51 204.1 137 67.2
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.5e-50 203.4 138 65.9
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 2.6e-50 202.6 167 63.5
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 3.4e-50 202.2 182 58.8
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 3.4e-50 202.2 129 72.1
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 5.8e-50 201.4 185 55.1
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 7.5e-50 201.1 247 46.6
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.1e-48 197.2 145 64.8
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.2e-47 193.7 271 42.8
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 2.0e-47 193.0 183 55.2
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.7e-46 189.9 150 60.7
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 5.0e-46 188.3 117 70.1
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 8.9e-43 177.6 138 61.6
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.8e-42 174.9 130 66.9
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 4.9e-41 171.8 123 61.0
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 3.9e-38 162.2 138 53.6
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 6.6e-38 161.4 87 82.8
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 6.2e-36 154.8 124 55.6
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 8.9e-35 151.0 88 76.1
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 4.6e-31 138.7 149 52.3
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.0e-30 136.0 86 72.1
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 2.5e-29 132.9 119 57.1
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 7.3e-29 131.3 116 52.6
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 3.6e-28 129.0 79 69.6
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.3e-25 120.6 72 70.8
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 1.7e-25 120.2 72 69.4
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 2.1e-23 113.2 65 72.3
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 7.8e-23 111.3 119 55.5
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 7.3e-21 104.8 113 43.4
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 4.8e-20 102.1 60 71.7
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.2e-18 97.4 102 42.2
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 6.2e-12 75.1 90 56.7
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 9.9e-10 67.8 63 52.4
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 2.3e-06 56.6 35 62.9


User provided reference genes

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