Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 0.0e+00 1382.5 693 100.0
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 7.0e-213 744.6 645 60.0
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 5.7e-207 724.9 639 57.6
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 1.7e-206 723.4 639 57.4
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 2.7e-201 706.1 646 56.8
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 4.0e-200 702.2 640 55.8
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 5.0e-195 685.3 648 55.9
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 4.2e-194 682.2 655 55.1
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 2.7e-193 679.5 643 55.7
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 1.8e-192 676.8 643 56.1
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 5.0e-187 658.7 637 53.8
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 2.8e-185 652.9 650 53.4
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 5.2e-184 648.7 663 52.3
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 6.8e-184 648.3 638 53.8
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 5.7e-183 645.2 660 52.7
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 7.5e-183 644.8 656 51.8
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 2.8e-182 642.9 632 53.0
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 2.4e-181 639.8 638 54.1
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 1.2e-180 637.5 659 53.4
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 1.7e-179 633.6 643 52.7
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 8.6e-179 631.3 672 51.0
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 1.1e-173 614.4 666 50.2
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 3.2e-173 612.8 659 50.2
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 3.0e-171 606.3 655 51.3
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 1.1e-168 597.8 497 60.4
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 2.4e-165 586.6 650 49.4
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 1.6e-164 583.9 662 47.9
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 1.3e-163 580.9 638 49.4
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 1.6e-161 573.9 650 47.1
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.6e-161 573.9 652 48.0
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 8.1e-161 571.6 573 51.5
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 8.1e-161 571.6 650 47.4
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 1.1e-160 571.2 650 47.4
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 3.1e-160 569.7 645 48.2
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 6.8e-160 568.5 680 46.9
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 4.4e-159 565.8 655 46.4
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 5.8e-159 565.5 663 47.7
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 8.3e-158 561.6 683 47.6
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 1.1e-157 561.2 644 48.6
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 4.1e-157 559.3 643 47.7
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 4.6e-156 555.8 665 46.6
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 1.0e-155 554.7 665 46.6
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 2.3e-155 553.5 665 46.5
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 5.1e-155 552.4 651 46.7
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 1.1e-154 551.2 663 46.0
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 4.3e-154 549.3 643 46.8
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 2.8e-153 546.6 473 59.4
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 2.8e-153 546.6 667 46.8
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 5.2e-152 542.3 665 45.7
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 8.9e-152 541.6 646 47.7
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 8.9e-152 541.6 515 52.4
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 1.5e-151 540.8 650 46.6
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 1.5e-151 540.8 645 47.0
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 5.8e-151 538.9 642 46.3
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 1.3e-150 537.7 664 45.6
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 1.7e-150 537.3 600 49.3
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 2.4e-149 533.5 640 47.8
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 4.2e-149 532.7 584 48.3
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 4.6e-148 529.3 741 43.3
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 3.0e-147 526.6 578 49.0
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 3.0e-147 526.6 652 45.4
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 8.7e-147 525.0 654 46.9
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 3.6e-145 519.6 771 41.8
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 1.7e-142 510.8 573 48.7
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 1.1e-141 508.1 645 44.7
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 8.7e-139 498.4 468 55.8
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 1.9e-138 497.3 580 47.2
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 2.6e-135 486.9 648 43.7
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 1.3e-134 484.6 493 51.3
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 1.1e-133 481.5 644 43.6
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 7.9e-132 475.3 430 57.0
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 2.3e-131 473.8 660 42.6
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 2.1e-124 450.7 519 47.4
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 5.7e-122 442.6 669 40.2
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 5.3e-120 436.0 622 44.7
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 6.9e-120 435.6 686 40.4
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 2.9e-118 430.3 547 44.2
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 3.0e-115 420.2 577 43.0
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 3.3e-114 416.8 665 39.7
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 2.8e-113 413.7 706 38.4
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 2.4e-112 410.6 647 40.0
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 2.4e-112 410.6 626 40.3
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 4.5e-111 406.4 497 46.1
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.0e-99 368.6 634 37.9
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 7.0e-96 355.9 354 54.5
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 1.7e-94 351.3 658 37.7
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 3.2e-93 347.1 756 33.3
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 6.5e-86 322.8 266 60.5
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 4.7e-84 316.6 545 40.0
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.0e-83 315.5 476 41.4
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.8e-83 314.7 476 41.4
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 8.8e-83 312.4 657 34.2
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 6.3e-81 306.2 467 37.7
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 6.1e-68 263.1 263 52.5
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 3.4e-66 257.3 266 51.5
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 7.0e-64 249.6 505 32.7
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 2.8e-44 184.5 349 39.5
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 1.7e-38 165.2 380 33.4
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 1.5e-37 162.2 198 45.5
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 6.8e-35 153.3 178 50.6
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 1.2e-34 152.5 364 33.0
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 2.7e-31 141.4 167 45.5
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 1.0e-30 139.4 422 30.1
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 1.5e-29 135.6 203 40.9
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 2.0e-26 125.2 173 42.2
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 3.5e-23 114.4 498 25.7
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 5.6e-21 107.1 221 33.0
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 2.6e-18 98.2 156 38.5
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 2.4e-16 91.7 104 48.1
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 3.0e-14 84.7 113 32.7
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 1.1e-13 82.8 151 36.4
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 2.5e-13 81.6 84 44.0
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 2.1e-07 62.0 94 30.9
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 7.9e-07 60.1 139 33.1


User provided reference genes

Program Settings