Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 2.1e-140 502.3 243 100.0
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 3.0e-126 455.3 242 89.3
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 3.9e-126 454.9 243 88.1
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 3.9e-126 454.9 243 88.1
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 3.9e-126 454.9 243 88.9
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.5e-125 453.0 243 88.5
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.9e-125 452.6 243 87.7
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 1.9e-125 452.6 243 88.1
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 9.5e-125 450.3 243 87.2
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 9.5e-125 450.3 243 87.7
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 2.8e-124 448.7 243 87.7
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 2.3e-123 445.7 243 86.4
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 3.1e-123 445.3 243 88.9
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 4.0e-123 444.9 243 86.8
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 5.2e-123 444.5 243 87.7
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 8.9e-123 443.7 243 86.4
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.2e-122 443.4 243 86.8
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.2e-122 443.4 243 86.4
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 2.0e-122 442.6 243 86.8
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 2.6e-122 442.2 243 85.2
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 4.4e-122 441.4 242 86.8
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.8e-122 441.0 243 86.4
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 9.8e-122 440.3 243 85.6
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.3e-121 439.9 243 86.0
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.7e-121 439.5 243 85.2
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 1.7e-121 439.5 243 85.6
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 2.2e-121 439.1 243 84.8
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.2e-121 439.1 243 84.8
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 2.2e-121 439.1 243 85.6
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.7e-121 438.3 243 86.4
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 3.7e-121 438.3 244 86.1
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 4.9e-121 438.0 243 85.2
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 6.4e-121 437.6 243 85.2
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 3.2e-120 435.3 243 84.8
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 4.1e-120 434.9 243 84.4
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 7.0e-120 434.1 243 85.6
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 7.0e-120 434.1 242 83.5
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 7.0e-120 434.1 242 83.5
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 7.0e-120 434.1 243 84.0
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 9.2e-120 433.7 243 83.1
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 1.2e-119 433.3 243 83.1
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 2.1e-119 432.6 244 84.4
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 2.1e-119 432.6 243 85.2
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 2.1e-119 432.6 250 83.6
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 2.7e-119 432.2 243 82.7
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 2.7e-119 432.2 243 84.0
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 2.7e-119 432.2 243 84.0
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 2.7e-119 432.2 243 84.0
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 3.5e-119 431.8 243 82.7
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 6.0e-119 431.0 243 82.7
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 1.0e-118 430.3 243 83.1
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.0e-118 430.3 243 83.1
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.0e-118 430.3 242 83.1
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 1.0e-118 430.3 243 83.1
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 1.7e-118 429.5 243 84.4
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 2.3e-118 429.1 243 83.5
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 2.3e-118 429.1 243 83.5
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 3.0e-118 428.7 243 82.7
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 3.0e-118 428.7 243 83.5
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 3.0e-118 428.7 243 83.5
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 3.9e-118 428.3 244 83.6
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 6.6e-118 427.6 243 82.7
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 6.6e-118 427.6 243 82.7
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 8.6e-118 427.2 243 82.7
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 8.6e-118 427.2 242 82.2
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 1.1e-117 426.8 242 82.6
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 2.5e-117 425.6 243 82.3
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 7.3e-117 424.1 242 81.4
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 7.3e-117 424.1 242 81.4
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 1.2e-116 423.3 243 81.5
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 2.1e-116 422.5 243 81.5
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 3.6e-116 421.8 243 81.5
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 3.1e-115 418.7 242 81.8
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.1e-115 418.7 243 82.3
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 5.2e-115 417.9 243 80.2
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 6.8e-115 417.5 243 81.1
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 2.0e-114 416.0 243 80.2
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 2.6e-114 415.6 243 80.2
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 4.4e-114 414.8 243 79.4
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.3e-113 413.3 243 79.8
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 1.3e-113 413.3 243 78.6
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 2.2e-113 412.5 243 77.8
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 2.2e-113 412.5 243 77.4
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 3.7e-113 411.8 243 79.4
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 4.9e-113 411.4 243 80.2
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 1.4e-112 409.8 243 78.2
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.9e-112 409.5 286 69.9
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 2.4e-112 409.1 243 77.0
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.4e-112 409.1 243 77.0
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 3.2e-112 408.7 243 78.6
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 9.2e-112 407.1 243 78.2
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.2e-111 406.8 243 75.7
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 1.0e-110 403.7 243 79.0
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 6.6e-110 401.0 240 78.8
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 2.4e-107 392.5 243 79.0
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 6.0e-103 377.9 242 75.6
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 1.6e-100 369.8 207 86.0
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 1.2e-98 363.6 242 69.4
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 2.1e-95 352.8 243 67.9
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 3.3e-93 345.5 243 65.8
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 7.3e-93 344.4 192 85.9
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 6.2e-92 341.3 238 67.2
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.1e-91 340.5 242 64.5
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 5.3e-91 338.2 190 86.3
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 5.8e-90 334.7 192 82.3
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 2.2e-89 332.8 192 81.8
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 8.4e-89 330.9 190 82.6
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 3.5e-87 325.5 202 77.7
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 6.0e-87 324.7 218 74.3
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 1.9e-85 319.7 245 62.0
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 2.8e-84 315.8 178 85.4
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.4e-83 313.5 243 61.3
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 1.9e-80 303.1 245 60.0
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 6.0e-79 298.1 165 84.2
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 4.3e-77 292.0 243 59.3
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 4.0e-75 285.4 205 66.8
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 5.8e-74 281.6 168 79.2
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 9.7e-69 264.2 189 72.0
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.8e-67 260.0 238 55.9
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 4.1e-59 232.3 258 52.3
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 1.5e-58 230.3 189 64.6
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 2.6e-53 213.0 118 82.2
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 1.4e-35 154.1 85 82.4
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.2e-29 134.4 100 65.0
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.6e-29 133.3 256 35.9
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 9.8e-21 104.8 299 28.1
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 1.8e-19 100.5 65 73.8
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 7.8e-18 95.1 236 33.1
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 1.5e-16 90.9 104 55.8
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 1.2e-13 81.3 45 73.3
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 7.3e-08 62.0 42 69.0


User provided reference genes

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