Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 2.8e-143 511.9 254 100.0
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 1.1e-46 191.0 139 68.3
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 2.5e-43 179.9 145 60.7
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 3.3e-43 179.5 145 61.4
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 4.3e-43 179.1 125 68.0
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 7.3e-43 178.3 126 69.0
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 7.3e-43 178.3 132 65.9
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 1.2e-42 177.6 126 67.5
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 1.2e-42 177.6 128 64.8
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 8.1e-42 174.9 143 65.7
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 1.4e-41 174.1 148 59.5
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 1.8e-41 173.7 137 62.0
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 4.0e-41 172.6 126 66.7
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 6.8e-41 171.8 124 67.7
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 8.9e-41 171.4 135 63.7
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.9e-41 171.4 137 61.3
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.9e-41 171.4 137 61.3
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 3.4e-40 169.5 123 62.6
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.4e-40 169.5 137 60.6
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.8e-40 168.7 137 60.6
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.8e-40 168.7 137 60.6
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.8e-40 168.7 137 60.6
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 9.8e-40 167.9 131 64.1
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-39 167.2 137 59.9
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-39 167.2 137 59.9
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 2.9e-39 166.4 125 64.8
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 2.9e-39 166.4 147 57.1
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 4.9e-39 165.6 157 52.9
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.9e-39 165.6 137 59.9
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 6.4e-39 165.2 112 68.8
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 6.4e-39 165.2 134 61.2
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 8.3e-39 164.9 120 66.7
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-38 164.5 137 59.1
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.9e-38 163.7 111 71.2
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.4e-38 163.3 129 62.0
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 2.4e-38 163.3 125 60.0
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 3.2e-38 162.9 131 61.8
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 3.2e-38 162.9 125 63.2
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 5.4e-38 162.2 121 66.9
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.1e-38 161.8 144 57.6
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 9.2e-38 161.4 129 62.0
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 1.2e-37 161.0 153 54.9
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 1.2e-37 161.0 142 57.7
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 2.1e-37 160.2 123 59.3
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 2.1e-37 160.2 146 54.1
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.7e-37 159.8 135 57.8
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 6.0e-37 158.7 114 64.9
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 6.0e-37 158.7 125 60.0
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 7.8e-37 158.3 126 60.3
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 1.0e-36 157.9 138 55.8
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.0e-36 157.9 120 65.0
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 1.3e-36 157.5 128 64.1
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.7e-36 157.1 137 57.7
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.3e-36 156.8 137 58.4
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.3e-36 156.8 137 57.7
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 3.9e-36 156.0 154 51.9
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 5.1e-36 155.6 113 63.7
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 6.6e-36 155.2 131 55.7
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 6.6e-36 155.2 126 61.1
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 1.1e-35 154.5 110 67.3
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.1e-35 154.5 137 56.9
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 1.5e-35 154.1 160 48.8
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 1.9e-35 153.7 139 55.4
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 3.3e-35 152.9 130 57.7
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 2.1e-34 150.2 126 57.9
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 2.8e-34 149.8 151 48.3
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-33 147.5 109 65.1
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 1.8e-33 147.1 126 60.3
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 8.9e-33 144.8 130 56.2
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 1.7e-31 140.6 127 53.5
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.2e-31 140.2 138 50.7
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 1.6e-29 134.0 118 55.9
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 4.6e-29 132.5 137 51.1
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 4.6e-29 132.5 137 51.1
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.0e-28 131.3 145 49.7
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 1.3e-28 131.0 96 59.4
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 8.6e-28 128.3 144 50.0
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 1.5e-27 127.5 94 63.8
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 1.9e-27 127.1 208 35.6
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 5.6e-27 125.6 139 51.1
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.2e-26 124.4 122 53.3
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 1.6e-26 124.0 113 56.6
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 2.1e-26 123.6 123 51.2
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.8e-26 123.2 95 60.0
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 1.4e-25 120.9 82 69.5
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 2.6e-24 116.7 136 48.5
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 2.6e-24 116.7 134 45.5
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 2.2e-23 113.6 109 56.0
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.2e-23 113.6 95 57.9
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 3.8e-23 112.8 126 49.2
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 8.4e-23 111.7 118 51.7
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 1.1e-22 111.3 119 49.6
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.4e-22 110.9 130 50.0
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 1.9e-22 110.5 129 46.5
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 3.2e-22 109.8 122 52.5
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 3.2e-22 109.8 120 50.0
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 4.2e-22 109.4 100 60.0
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 4.2e-22 109.4 119 44.5
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 7.1e-22 108.6 119 47.9
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 1.6e-21 107.5 115 51.3
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 2.1e-21 107.1 130 45.4
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 2.7e-21 106.7 119 50.4
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 3.5e-21 106.3 144 39.6
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 7.8e-21 105.1 123 46.3
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 1.7e-20 104.0 128 46.9
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 3.0e-20 103.2 94 50.0
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 3.9e-20 102.8 125 48.0
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 5.1e-20 102.4 112 51.8
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 6.6e-20 102.1 123 45.5
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 1.1e-19 101.3 105 49.5
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.5e-19 100.9 118 51.7
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 5.6e-19 99.0 125 45.6
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 7.3e-19 98.6 119 47.1
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 9.6e-19 98.2 119 46.2
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 3.6e-18 96.3 125 45.6
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 3.6e-18 96.3 130 43.8
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 4.8e-18 95.9 71 60.6
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 1.8e-17 94.0 73 56.2
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 4.5e-16 89.4 83 54.2
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.2e-15 87.0 71 63.4
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 6.4e-15 85.5 111 41.4
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 3.2e-14 83.2 60 61.7
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 3.2e-14 83.2 106 43.4
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 5.4e-14 82.4 127 37.8
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 6.7e-12 75.5 116 37.9
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 3.3e-11 73.2 87 47.1
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 2.8e-10 70.1 112 36.6
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 9.0e-09 65.1 63 54.0
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 1.2e-08 64.7 63 49.2
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.0e-08 63.9 62 53.2
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.6e-08 63.5 54 57.4
RcHm_v2.0_Chr5g0034431 Rosa chinensis HOM05D005439 ORTHO05D006793 2.6e-08 63.5 50 54.0
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.3e-07 61.2 49 53.1
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 3.8e-07 59.7 84 41.7
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 4.9e-07 59.3 44 65.9
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 6.4e-07 58.9 84 41.7
FAN09G3549 Fragaria x ananassa HOM05D005439 ORTHO05D006793 3.2e-06 56.6 50 52.0


User provided reference genes

Program Settings