Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 2.6e-43 178.3 90 100.0
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 3.1e-28 128.3 74 82.4
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 1.2e-27 126.3 78 78.2
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 1.2e-27 126.3 80 75.0
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 3.4e-27 124.8 86 72.1
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 5.8e-27 124.0 82 72.0
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 7.5e-27 123.6 85 71.8
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.7e-26 122.5 83 69.9
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 3.7e-26 121.3 77 70.1
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 6.4e-26 120.6 81 70.4
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 6.4e-26 120.6 82 69.5
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 6.4e-26 120.6 83 71.1
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 6.4e-26 120.6 83 71.1
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 1.1e-25 119.8 82 68.3
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 1.9e-25 119.0 81 69.1
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 2.4e-25 118.6 69 73.9
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 3.2e-25 118.2 78 71.8
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 4.1e-25 117.9 78 70.5
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 4.1e-25 117.9 90 66.7
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 7.1e-25 117.1 84 67.9
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 9.2e-25 116.7 83 66.3
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 9.2e-25 116.7 80 66.2
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 9.2e-25 116.7 79 67.1
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 1.2e-24 116.3 79 73.4
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 1.2e-24 116.3 77 67.5
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.6e-24 115.9 77 72.7
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 2.1e-24 115.5 65 78.5
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 2.7e-24 115.2 80 70.0
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 2.7e-24 115.2 80 70.0
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 3.5e-24 114.8 75 66.7
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 3.5e-24 114.8 77 67.5
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 4.6e-24 114.4 75 66.7
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 6.0e-24 114.0 68 73.5
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 7.8e-24 113.6 68 72.1
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 7.8e-24 113.6 68 73.5
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 7.8e-24 113.6 66 74.2
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 1.3e-23 112.8 86 62.8
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 1.3e-23 112.8 66 75.8
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 2.3e-23 112.1 79 64.6
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 2.3e-23 112.1 81 66.7
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 3.0e-23 111.7 76 64.5
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 3.9e-23 111.3 88 60.2
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 3.9e-23 111.3 67 70.1
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 3.9e-23 111.3 86 64.0
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 6.6e-23 110.5 86 62.8
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 6.6e-23 110.5 85 60.0
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 6.6e-23 110.5 82 63.4
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 1.5e-22 109.4 66 74.2
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 2.5e-22 108.6 73 68.5
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 2.5e-22 108.6 80 62.5
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 7.3e-22 107.1 58 81.0
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 7.3e-22 107.1 67 68.7
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 9.5e-22 106.7 69 69.6
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 9.5e-22 106.7 69 69.6
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 9.5e-22 106.7 81 60.5
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 9.5e-22 106.7 78 66.7
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 2.1e-21 105.5 60 71.7
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 2.1e-21 105.5 81 59.3
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 2.8e-21 105.1 83 62.7
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 3.6e-21 104.8 74 64.9
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 6.2e-21 104.0 84 66.7
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 6.2e-21 104.0 69 66.7
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 8.1e-21 103.6 73 61.6
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 8.1e-21 103.6 68 63.2
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 1.1e-20 103.2 82 54.9
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 1.4e-20 102.8 100 55.0
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.8e-20 102.4 79 59.5
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 4.0e-20 101.3 64 67.2
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 4.0e-20 101.3 72 62.5
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 1.2e-19 99.8 82 58.5
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 1.2e-19 99.8 67 64.2
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 5.8e-19 97.4 66 66.7
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 7.6e-19 97.1 64 67.2
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 7.6e-19 97.1 64 67.2
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 2.2e-18 95.5 51 74.5
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 6.4e-18 94.0 63 66.7
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 6.4e-18 94.0 63 66.7
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 1.4e-17 92.8 63 61.9
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.4e-17 92.8 71 63.4
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 4.2e-17 91.3 64 65.6
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 4.2e-17 91.3 61 63.9
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 4.2e-17 91.3 61 63.9
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 4.2e-17 91.3 61 63.9
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 4.2e-17 91.3 63 63.5
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 5.4e-17 90.9 68 61.8
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 7.1e-17 90.5 71 62.0
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.6e-16 89.4 63 63.5
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 3.5e-16 88.2 63 63.5
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 6.0e-16 87.4 63 57.1
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 1.0e-15 86.7 58 65.5
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.3e-15 86.3 63 63.5
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 2.3e-15 85.5 61 63.9
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.3e-15 85.5 68 54.4
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 3.0e-15 85.1 73 54.8
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 3.9e-15 84.7 86 53.5
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 3.9e-15 84.7 57 66.7
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 6.6e-15 84.0 88 52.3
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 6.6e-15 84.0 75 52.0
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 6.6e-15 84.0 68 54.4
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 1.1e-14 83.2 84 51.2
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 1.1e-14 83.2 115 40.9
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.5e-14 82.8 80 47.5
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 1.9e-14 82.4 79 48.1
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 4.3e-14 81.3 65 56.9
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 5.6e-14 80.9 40 80.0
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 9.6e-14 80.1 59 62.7
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 9.6e-14 80.1 79 53.2
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 1.2e-13 79.7 58 63.8
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 2.8e-13 78.6 60 65.0
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 2.8e-13 78.6 46 65.2
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 6.2e-13 77.4 59 55.9
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 1.1e-12 76.6 56 60.7
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.1e-12 76.6 62 58.1
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.1e-12 76.6 63 61.9
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 3.1e-12 75.1 54 61.1
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 9.9e-11 70.1 46 63.0
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 2.9e-10 68.6 44 63.6
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 3.8e-10 68.2 56 60.7
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 1.1e-09 66.6 57 50.9
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 1.1e-09 66.6 53 52.8
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 1.9e-09 65.9 59 52.5
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 2.4e-09 65.5 59 50.8
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 7.1e-09 63.9 65 41.5
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 1.6e-08 62.8 159 27.7
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.1e-08 62.4 60 46.7
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 7.8e-08 60.5 106 35.8
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 7.8e-08 60.5 38 60.5
BNapus_Darmor_BZH_scaffold_293p00030 Brassica napus HOM05D006125 ORTHO05D007404 3.0e-07 58.5 41 63.4
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 1.9e-06 55.8 59 45.8
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.9e-06 55.8 58 44.8


User provided reference genes

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