Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 1.9e-220 768.8 390 100.0
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 9.5e-159 563.9 373 75.6
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 3.6e-158 562.0 352 78.7
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.0e-157 560.5 389 74.0
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.3e-157 559.3 375 75.5
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 3.0e-157 558.9 376 75.0
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 5.2e-157 558.1 319 83.4
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 8.9e-157 557.4 319 83.7
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 7.5e-156 554.3 377 73.7
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 1.3e-155 553.5 387 72.9
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 1.3e-155 553.5 376 75.0
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.7e-155 553.1 384 73.2
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.7e-155 553.1 356 77.0
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 3.7e-155 552.0 388 72.4
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 4.9e-155 551.6 365 76.7
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 4.9e-155 551.6 381 72.7
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 1.1e-154 550.4 322 83.2
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 1.4e-154 550.1 319 83.1
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 1.4e-154 550.1 354 76.8
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 1.8e-154 549.7 376 73.1
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 5.4e-154 548.1 376 73.1
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 9.2e-154 547.4 352 77.6
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 1.2e-153 547.0 321 80.4
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.2e-153 547.0 384 72.4
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 1.2e-153 547.0 385 71.4
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.6e-153 546.6 385 71.7
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 1.6e-153 546.6 318 82.4
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 3.5e-153 545.4 378 73.3
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 4.6e-153 545.0 391 71.4
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 7.8e-153 544.3 384 72.1
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 7.8e-153 544.3 381 73.0
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 7.8e-153 544.3 384 72.1
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 2.3e-152 542.7 377 72.9
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 2.3e-152 542.7 375 72.3
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 2.9e-152 542.3 394 70.8
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 2.9e-152 542.3 385 71.2
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 2.9e-152 542.3 371 73.3
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 5.0e-152 541.6 382 71.2
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 5.0e-152 541.6 376 73.7
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 1.1e-151 540.4 373 73.5
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 1.5e-151 540.0 391 70.1
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 9.5e-151 537.3 384 71.4
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 1.2e-150 537.0 355 74.9
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.1e-150 536.2 341 76.0
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 2.1e-150 536.2 382 71.2
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 3.6e-150 535.4 379 70.4
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 4.0e-149 531.9 394 68.3
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 4.0e-149 531.9 327 78.3
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 8.9e-149 530.8 374 71.4
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 8.9e-149 530.8 407 68.3
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.2e-148 530.4 329 76.9
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 2.0e-148 529.6 358 72.6
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.6e-148 529.3 379 70.7
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 5.8e-148 528.1 327 77.7
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 9.8e-148 527.3 363 71.9
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 9.8e-148 527.3 327 77.4
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 9.8e-148 527.3 316 78.5
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 1.3e-147 526.9 327 77.1
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 3.7e-147 525.4 364 70.3
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 3.7e-147 525.4 363 71.6
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 4.9e-147 525.0 324 77.8
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 4.9e-147 525.0 329 77.2
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 1.4e-146 523.5 324 77.5
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 1.4e-146 523.5 324 77.5
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 4.1e-146 521.9 355 71.5
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 7.0e-146 521.2 379 67.0
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 9.2e-146 520.8 376 69.7
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 9.2e-146 520.8 357 74.2
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 9.2e-146 520.8 388 69.6
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 1.6e-145 520.0 327 76.1
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 2.0e-145 519.6 361 70.4
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 7.8e-145 517.7 386 69.2
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 3.9e-144 515.4 389 66.3
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 1.1e-143 513.8 329 75.1
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 4.3e-143 511.9 336 76.2
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 5.6e-143 511.5 370 71.9
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 1.2e-142 510.4 392 67.6
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 4.0e-141 505.4 392 66.8
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 8.9e-141 504.2 330 72.1
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 9.8e-140 500.7 362 67.1
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 2.9e-139 499.2 384 68.0
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 3.9e-136 488.8 276 83.3
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 5.6e-135 485.0 371 67.9
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 2.8e-134 482.6 382 63.9
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 2.6e-132 476.1 280 82.1
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 2.3e-128 463.0 298 76.2
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 1.5e-127 460.3 268 81.0
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 1.3e-123 447.2 384 63.3
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 2.9e-123 446.0 267 78.7
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 3.3e-119 432.6 259 80.3
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 1.3e-115 420.6 310 70.3
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.6e-113 413.7 268 71.6
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 6.6e-112 408.3 320 61.9
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 5.6e-111 405.2 328 58.2
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 5.3e-109 398.7 341 57.5
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 1.3e-107 394.0 327 57.5
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 2.4e-106 389.8 267 72.7
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 3.5e-105 386.0 309 66.0
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 9.0e-101 371.3 283 68.2
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 1.5e-100 370.5 290 65.2
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.8e-96 357.1 287 66.6
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 1.9e-90 337.0 234 70.9
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 8.5e-83 311.6 267 65.9
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 1.7e-75 287.3 273 57.9
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 7.2e-74 282.0 320 45.3
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 7.2e-74 282.0 320 45.3
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 2.3e-72 276.9 188 72.9
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 1.8e-69 267.3 311 45.0
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.0e-67 261.5 155 81.3
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 6.5e-67 258.8 204 64.7
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 2.1e-65 253.8 330 41.2
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 6.3e-62 242.3 166 75.9
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.1e-61 241.5 134 85.8
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 2.9e-38 163.7 91 86.8
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 4.3e-34 149.8 393 30.5
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 3.6e-33 146.7 100 66.0
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.3e-30 138.3 88 71.6
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 3.5e-28 130.2 79 75.9
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 7.8e-28 129.0 90 67.8
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 2.9e-22 110.5 78 67.9
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 4.1e-21 106.7 105 54.3
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 1.5e-18 98.2 75 69.3
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 3.1e-16 90.5 54 79.6
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 5.2e-16 89.7 58 69.0
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 2.6e-15 87.4 70 61.4
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 2.6e-15 87.4 70 61.4
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 2.9e-14 84.0 59 72.9
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 2.4e-13 80.9 95 48.4
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 1.2e-12 78.6 46 78.3
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 3.9e-11 73.6 119 47.9
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 1.2e-09 68.6 98 49.0
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 1.6e-09 68.2 291 26.1
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 4.7e-09 66.6 106 46.2
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 1.1e-08 65.5 87 48.3
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 1.4e-08 65.1 75 45.3
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 1.8e-08 64.7 281 24.9
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 2.4e-08 64.3 42 76.2
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 5.2e-08 63.2 301 23.3
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 5.2e-08 63.2 296 25.3
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 6.9e-08 62.8 33 81.8
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 6.9e-08 62.8 277 26.0
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 8.9e-08 62.4 178 30.3
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 8.9e-08 62.4 310 23.2
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 1.2e-07 62.0 298 23.5
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 2.6e-07 60.8 302 24.8
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 2.6e-07 60.8 277 25.3
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 2.6e-07 60.8 330 23.9
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 3.4e-07 60.5 284 23.9
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 3.4e-07 60.5 309 24.3
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 4.4e-07 60.1 280 23.9
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 5.8e-07 59.7 283 25.1
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 5.8e-07 59.7 279 27.2
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 9.9e-07 58.9 277 24.9
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 1.3e-06 58.5 301 24.3
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 1.3e-06 58.5 284 25.7
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 1.3e-06 58.5 336 25.0
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 1.3e-06 58.5 278 26.3
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.3e-06 58.5 344 24.7
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 1.7e-06 58.2 259 26.3
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 2.2e-06 57.8 277 24.5
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 2.9e-06 57.4 277 24.5
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 2.9e-06 57.4 277 24.5
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 2.9e-06 57.4 277 24.2
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 4.9e-06 56.6 340 22.9
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 6.4e-06 56.2 277 25.3


User provided reference genes

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