Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g05120 Coffea canephora HOM05D007259 ORTHO05D009158 1.1e-95 353.2 165 100.0
Peaxi162Scf00207g00430 Petunia axillaris HOM05D007259 ORTHO05D009158 3.6e-83 311.6 165 83.6
CAN.G1932.2 Capsicum annuum HOM05D007259 ORTHO05D009158 3.0e-82 308.5 165 83.0
Actinidia36875 Actinidia chinensis HOM05D007259 ORTHO05D009158 1.2e-81 306.6 163 82.2
Sopen06g025720 Solanum pennellii HOM05D007259 ORTHO05D009158 9.8e-81 303.5 165 81.8
Lsat_1_v5_gn_5_8261 Lactuca sativa HOM05D007259 ORTHO05D009158 1.3e-80 303.1 165 80.6
Solyc06g068470.3 Solanum lycopersicum HOM05D007259 ORTHO05D009158 1.3e-80 303.1 165 81.8
PGSC0003DMG400028490 Solanum tuberosum HOM05D007259 ORTHO05D009158 1.4e-79 299.7 165 80.6
Rhsim08G0205600 Rhododendron simsii HOM05D007259 ORTHO05D009158 5.4e-79 297.7 163 79.8
Ciclev10026584m.g Citrus clementina HOM05D007259 ORTHO05D009158 9.1e-79 297.0 165 80.0
Dinv21412 Davidia involucrata HOM05D007259 ORTHO05D009158 1.2e-78 296.6 165 79.4
RcHm_v2.0_Chr2g0132951 Rosa chinensis HOM05D007259 ORTHO05D009158 1.6e-78 296.2 165 78.2
FvH4_6g28630 Fragaria vesca HOM05D007259 ORTHO05D009158 2.0e-78 295.8 165 78.2
FAN14G4954 Fragaria x ananassa HOM05D007259 ORTHO05D009158 2.0e-78 295.8 165 78.2
CSS0004525 Camellia sinensis var. sinensis HOM05D007259 ORTHO05D009158 3.5e-78 295.0 163 78.5
FAN05G5272 Fragaria x ananassa HOM05D007259 ORTHO05D009158 3.5e-78 295.0 165 77.6
Lj5A81T88 Lonicera japonica HOM05D007259 ORTHO05D009158 4.5e-78 294.7 165 77.0
HanXRQChr05g0153761 Helianthus annuus HOM05D007259 ORTHO05D009158 1.0e-77 293.5 165 77.6
MSTRG.4677 Avicennia marina HOM05D007259 ORTHO05D009158 3.8e-77 291.6 165 79.4
Oeu060130.1 Olea europaea HOM05D007259 ORTHO05D009158 5.0e-77 291.2 165 78.2
Manes.04G102300 Manihot esculenta HOM05D007259 ORTHO05D009158 6.5e-77 290.8 165 78.8
Lj3g0012869 Lotus japonicus HOM05D007259 ORTHO05D009158 8.5e-77 290.4 163 77.9
PGR102G1952 Punica granatum HOM05D007259 ORTHO05D009158 1.1e-76 290.0 165 78.8
PSO170G4635 Papaver somniferum HOM05D007259 ORTHO05D009158 1.5e-76 289.7 166 78.9
SalBow6G4962 Salvia bowleyana HOM05D007259 ORTHO05D009158 1.5e-76 289.7 164 76.2
TWI75G0585 Tripterygium wilfordii HOM05D007259 ORTHO05D009158 1.5e-76 289.7 165 78.2
Eucgr.F03958 Eucalyptus grandis HOM05D007259 ORTHO05D009158 1.9e-76 289.3 165 76.4
CANSAT56G1631 Cannabis sativa HOM05D007259 ORTHO05D009158 3.2e-76 288.5 165 78.8
PSO017G0751 Papaver somniferum HOM05D007259 ORTHO05D009158 7.2e-76 287.3 166 78.3
Potri.001G044200 Populus trichocarpa HOM05D007259 ORTHO05D009158 7.2e-76 287.3 165 77.6
Sabra01G0030500 Salix brachista HOM05D007259 ORTHO05D009158 7.2e-76 287.3 165 77.0
Lalb_Chr01g0012071 Lupinus albus HOM05D007259 ORTHO05D009158 1.2e-75 286.6 163 78.5
Hund00433 Selenicereus undatus HOM05D007259 ORTHO05D009158 1.2e-75 286.6 165 78.2
FAN09G1653 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.6e-75 286.2 164 77.4
Gohir.D06G118700 Gossypium hirsutum HOM05D007259 ORTHO05D009158 1.6e-75 286.2 165 77.6
Gorai.010G136500 Gossypium raimondii HOM05D007259 ORTHO05D009158 2.7e-75 285.4 165 77.6
Medtr4g007095 Medicago truncatula HOM05D007259 ORTHO05D009158 3.6e-75 285.0 165 75.2
Ah.01g006970 Amaranthus hybridus HOM05D007259 ORTHO05D009158 4.7e-75 284.6 161 78.3
Sc12g0008330 Simmondsia chinensis HOM05D007259 ORTHO05D009158 4.7e-75 284.6 162 76.5
SGA_v2.0_scaffold26G11300 Striga asiatica HOM05D007259 ORTHO05D009158 6.1e-75 284.3 163 76.7
QL05p036089 Quercus lobata HOM05D007259 ORTHO05D009158 1.4e-74 283.1 166 77.7
Cfa001880 Carpinus fangiana HOM05D007259 ORTHO05D009158 1.8e-74 282.7 165 78.2
Gohir.A06G114200 Gossypium hirsutum HOM05D007259 ORTHO05D009158 1.8e-74 282.7 165 76.4
Atru.chr10.2413 Acer truncatum HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 75.2
Carub.0002s2668 Capsella rubella HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 75.8
VMungo0331G0163 Vigna mungo HOM05D007259 ORTHO05D009158 1.5e-73 279.6 163 75.5
Prupe.3G098300 Prunus persica HOM05D007259 ORTHO05D009158 2.0e-73 279.3 165 77.0
Sp5g34900 Schrenkiella parvula HOM05D007259 ORTHO05D009158 2.0e-73 279.3 165 74.5
Thhalv10019243m.g Eutrema salsugineum HOM05D007259 ORTHO05D009158 2.6e-73 278.9 165 74.5
TPR.G23079 Trifolium pratense HOM05D007259 ORTHO05D009158 2.6e-73 278.9 165 72.7
Glyma.08G218900 Glycine max HOM05D007259 ORTHO05D009158 3.4e-73 278.5 166 75.9
BcaC03g15926 Brassica carinata HOM05D007259 ORTHO05D009158 4.4e-73 278.1 165 75.2
BolC2t09700H Brassica oleracea HOM05D007259 ORTHO05D009158 4.4e-73 278.1 165 75.2
BcaB05g25221 Brassica carinata HOM05D007259 ORTHO05D009158 5.7e-73 277.7 165 74.5
Migut.D01126 Erythranthe guttata HOM05D007259 ORTHO05D009158 7.5e-73 277.3 163 76.1
C02p36870 Brassica napus HOM05D007259 ORTHO05D009158 9.8e-73 276.9 165 74.5
Duzib235G0063 Durio zibethinus HOM05D007259 ORTHO05D009158 9.8e-73 276.9 165 75.2
Medtr4g007090 Medicago truncatula HOM05D007259 ORTHO05D009158 1.3e-72 276.6 165 72.7
Nitab4.5_0008962g0030 Nicotiana tabacum HOM05D007259 ORTHO05D009158 1.3e-72 276.6 144 84.7
AT1G80860 Arabidopsis thaliana HOM05D007259 ORTHO05D009158 1.7e-72 276.2 165 75.2
GSVIVG01015956001 Vitis vinifera HOM05D007259 ORTHO05D009158 1.7e-72 276.2 165 75.2
EL10Ac9g22206 Beta vulgaris HOM05D007259 ORTHO05D009158 2.8e-72 275.4 166 73.5
A02p23100 Brassica napus HOM05D007259 ORTHO05D009158 3.7e-72 275.0 165 74.5
BraA02t07308Z Brassica rapa HOM05D007259 ORTHO05D009158 3.7e-72 275.0 165 74.5
AL2G40530 Arabidopsis lyrata HOM05D007259 ORTHO05D009158 6.3e-72 274.2 165 75.2
Thecc.06G041800 Theobroma cacao HOM05D007259 ORTHO05D009158 6.3e-72 274.2 165 73.9
CiPaw.01G254600 Carya illinoinensis HOM05D007259 ORTHO05D009158 1.4e-71 273.1 165 76.4
ClCG10G012930 Citrullus lanatus HOM05D007259 ORTHO05D009158 1.4e-71 273.1 165 73.9
Aa31LG4G1140 Aethionema arabicum HOM05D007259 ORTHO05D009158 2.4e-71 272.3 164 72.6
TPR.G23090 Trifolium pratense HOM05D007259 ORTHO05D009158 3.1e-71 271.9 165 71.5
CARHR073610 Cardamine hirsuta HOM05D007259 ORTHO05D009158 1.2e-70 270.0 165 73.9
Psat7g260280 Pisum sativum HOM05D007259 ORTHO05D009158 1.2e-70 270.0 158 75.9
THA.LOC104812409 Tarenaya hassleriana HOM05D007259 ORTHO05D009158 1.2e-70 270.0 165 73.3
CsaV3_3G032790 Cucumis sativus L. HOM05D007259 ORTHO05D009158 3.5e-70 268.5 165 72.7
Phvul.010G161400 Phaseolus vulgaris HOM05D007259 ORTHO05D009158 4.5e-70 268.1 163 73.0
Nn8g39898 Nelumbo nucifera HOM05D007259 ORTHO05D009158 7.7e-70 267.3 165 72.1
Sed0006537 Sechium edule HOM05D007259 ORTHO05D009158 3.6e-67 258.5 165 70.9
unitig_60.g25615 Utricularia gibba HOM05D007259 ORTHO05D009158 1.5e-65 253.1 202 60.4
MBI15_g08512_MAGBIO Magnolia biondii HOM05D007259 ORTHO05D009158 2.4e-63 245.7 161 65.8
BcaB05g25224 Brassica carinata HOM05D007259 ORTHO05D009158 7.3e-60 234.2 165 67.3
Zm00001eb184520 Zea mays HOM05D007259 ORTHO05D009158 9.5e-60 233.8 161 65.8
Haze_16667 Corylus avellana HOM05D007259 ORTHO05D009158 8.0e-59 230.7 262 47.7
ECA246G0776 Erigeron canadensis HOM05D007259 ORTHO05D009158 1.0e-58 230.3 126 81.7
Os02g0612100 Oryza sativa ssp. japonica HOM05D007259 ORTHO05D009158 1.8e-58 229.6 164 64.0
Potri.003G182400 Populus trichocarpa HOM05D007259 ORTHO05D009158 3.5e-54 215.3 117 82.9
HPP92_010735 Vanilla planifolia HOM05D007259 ORTHO05D009158 4.6e-54 214.9 154 64.3
CDE12G0386 Ceratophyllum demersum HOM05D007259 ORTHO05D009158 1.3e-53 213.4 141 66.0
SEGI_39537 Sequoiadendron giganteum HOM05D007259 ORTHO05D009158 1.6e-51 206.5 156 60.3
DCAR_021369 Daucus carota HOM05D007259 ORTHO05D009158 6.8e-50 201.1 109 82.6
SMO141G0127 Selaginella moellendorffii HOM05D007259 ORTHO05D009158 2.9e-48 195.7 158 56.3
AagrBONN_evm.TU.Sc2ySwM_117.1157 Anthoceros agrestis HOM05D007259 ORTHO05D009158 4.9e-48 194.9 157 54.8
Pp3c6_3720 Physcomitrium patens HOM05D007259 ORTHO05D009158 2.3e-45 186.0 164 54.9
Nitab4.5_0000886g0050 Nicotiana tabacum HOM05D007259 ORTHO05D009158 5.1e-37 158.3 91 74.7
Glyma.07G022900 Glycine max HOM05D007259 ORTHO05D009158 1.5e-36 156.8 84 82.1
MD17G1223600 Malus domestica HOM05D007259 ORTHO05D009158 2.1e-35 152.9 83 77.1
Aqoxy2G00331 Aquilegia oxysepala HOM05D001307 ORTHO05D001158 3.6e-35 152.1 91 71.4
FAN02G2583 Fragaria x ananassa HOM05D007259 ORTHO05D009158 3.6e-35 152.1 82 78.0
vmacro19057 Vaccinium macrocarpon HOM05D007259 ORTHO05D009158 1.8e-34 149.8 82 81.7
Cpa.g.sc10.78 Carica papaya HOM05D007259 ORTHO05D009158 1.2e-33 147.1 82 78.0
Lj5C80T7 Lonicera japonica HOM05D007259 ORTHO05D009158 1.7e-32 143.3 82 74.4
MD17G1223400 Malus domestica HOM05D007259 ORTHO05D009158 2.2e-32 142.9 83 77.1
ATR0739G058 Amborella trichopoda HOM05D007259 ORTHO05D009158 7.8e-30 134.4 87 70.1
MELO3C026739.2 Cucumis melo HOM05D007259 ORTHO05D009158 3.9e-29 132.1 82 68.3
HPP92_010738 Vanilla planifolia HOM05D007259 ORTHO05D009158 8.1e-27 124.4 94 63.8
SalBow8G2481 Salvia bowleyana HOM05D007259 ORTHO05D009158 4.8e-19 98.6 71 69.0
COL.COLO4_26703 Corchorus olitorius HOM05D007259 ORTHO05D009158 1.1e-12 77.4 43 81.4


User provided reference genes

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