Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 1.2e-133 479.9 264 100.0
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 1.4e-52 210.7 260 50.0
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 1.8e-52 210.3 260 49.6
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 5.4e-49 198.7 259 49.8
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 2.7e-48 196.4 186 62.4
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 1.3e-47 194.1 229 52.8
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 5.1e-47 192.2 259 49.0
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 6.6e-47 191.8 196 62.8
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 3.3e-46 189.5 245 49.4
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 4.3e-46 189.1 198 53.0
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 5.6e-46 188.7 198 52.0
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 7.3e-46 188.3 258 49.6
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 7.3e-46 188.3 182 59.3
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 1.6e-45 187.2 200 57.5
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.1e-45 186.8 198 53.0
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.1e-45 186.8 198 53.0
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 3.6e-45 186.0 243 50.6
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 3.6e-45 186.0 191 56.0
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.1e-44 184.5 184 58.2
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 1.4e-44 184.1 257 50.6
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 6.8e-44 181.8 191 53.9
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.0e-43 180.3 187 57.2
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.0e-43 180.3 187 57.2
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.6e-43 179.9 187 56.7
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 3.4e-43 179.5 186 57.5
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 7.6e-43 178.3 184 58.7
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 9.9e-43 177.9 183 51.4
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.7e-42 177.2 187 56.7
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 3.8e-42 176.0 181 56.9
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 4.9e-42 175.6 243 54.3
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 6.4e-42 175.3 204 49.5
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 1.1e-41 174.5 244 54.1
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 1.4e-41 174.1 266 47.4
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 2.4e-41 173.3 251 45.0
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 7.1e-41 171.8 181 56.4
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 9.3e-41 171.4 258 43.8
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 1.6e-40 170.6 265 47.9
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 2.7e-40 169.9 254 44.5
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 6.0e-40 168.7 257 44.4
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 7.8e-40 168.3 265 47.9
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 7.8e-40 168.3 258 43.4
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 1.7e-39 167.2 189 54.5
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 2.3e-39 166.8 189 56.1
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 5.1e-39 165.6 179 54.2
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 5.1e-39 165.6 200 43.5
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 6.6e-39 165.2 204 55.4
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 1.1e-38 164.5 256 45.7
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 1.5e-38 164.1 259 45.9
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 1.9e-38 163.7 246 42.3
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 4.3e-38 162.5 176 48.3
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 1.3e-37 161.0 176 50.0
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 1.1e-36 157.9 222 45.9
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 2.4e-36 156.8 180 45.6
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 2.4e-36 156.8 262 44.3
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 5.3e-36 155.6 192 50.5
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 5.3e-36 155.6 228 44.3
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 5.3e-36 155.6 193 52.8
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 9.0e-36 154.8 227 41.9
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 9.0e-36 154.8 241 41.9
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 1.2e-35 154.5 191 49.2
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 1.5e-35 154.1 183 48.6
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 2.6e-35 153.3 256 43.0
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 3.4e-35 152.9 192 51.0
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 7.6e-35 151.8 184 50.5
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 7.6e-35 151.8 220 48.6
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 1.7e-34 150.6 205 49.3
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 2.9e-34 149.8 203 48.3
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 2.9e-34 149.8 170 52.4
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 3.8e-34 149.4 190 49.5
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 6.4e-34 148.7 197 47.2
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 6.4e-34 148.7 249 41.0
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 8.4e-34 148.3 189 46.0
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 1.4e-33 147.5 179 50.3
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 1.9e-33 147.1 183 48.6
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 1.9e-33 147.1 158 62.7
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 4.2e-33 146.0 256 42.2
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 1.2e-32 144.4 192 49.0
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 1.6e-32 144.1 198 48.0
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 2.1e-32 143.7 230 42.2
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 2.7e-32 143.3 197 47.7
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 3.5e-32 142.9 187 47.6
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 4.6e-32 142.5 239 44.8
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 6.0e-32 142.1 197 47.2
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 6.0e-32 142.1 250 42.8
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 1.3e-31 141.0 183 50.3
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 1.3e-31 141.0 210 45.7
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 2.3e-31 140.2 170 52.9
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 5.1e-31 139.0 274 39.4
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 5.1e-31 139.0 227 44.5
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 5.1e-31 139.0 187 46.5
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 8.7e-31 138.3 171 50.3
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 9.6e-30 134.8 162 54.3
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 1.3e-29 134.4 182 43.4
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 2.1e-29 133.7 181 50.3
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 8.1e-29 131.7 182 46.7
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 1.8e-28 130.6 179 51.4
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 3.4e-27 126.3 220 40.0
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 4.5e-27 125.9 130 56.2
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 4.5e-27 125.9 232 45.3
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 7.6e-27 125.2 265 39.6
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 3.8e-26 122.9 224 40.6
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 6.4e-26 122.1 99 60.6
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.4e-26 122.1 243 42.4
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 4.2e-25 119.4 168 50.0
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 7.1e-25 118.6 185 48.1
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 7.1e-25 118.6 185 48.1
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 7.1e-25 118.6 185 48.1
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.5e-24 116.3 226 38.9
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 6.0e-24 115.5 184 47.8
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 6.0e-24 115.5 182 44.5
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 7.9e-24 115.2 107 48.6
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 7.9e-24 115.2 184 47.3
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 1.3e-23 114.4 253 40.7
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 5.1e-23 112.5 177 45.8
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 6.7e-23 112.1 177 47.5
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.3e-22 109.8 160 46.2
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.3e-22 109.8 92 52.2
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 5.6e-22 109.0 178 45.5
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.6e-21 107.5 229 43.2
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 2.8e-21 106.7 176 43.8
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 4.8e-21 105.9 154 49.4
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 2.4e-20 103.6 120 56.7
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 5.3e-20 102.4 160 50.6
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 1.5e-19 100.9 181 44.8
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 7.6e-19 98.6 156 48.1
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 3.8e-18 96.3 181 43.6
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 6.5e-18 95.5 227 38.3
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 1.9e-17 94.0 161 46.6
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 2.5e-17 93.6 194 37.1
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 3.2e-17 93.2 173 37.0
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 4.2e-17 92.8 183 36.6
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 4.2e-17 92.8 225 38.2
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 5.5e-17 92.4 225 40.0
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 5.5e-17 92.4 182 44.0
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 1.6e-16 90.9 162 43.2
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 2.7e-16 90.1 183 38.8
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 6.0e-16 89.0 233 36.9
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 1.8e-15 87.4 172 39.0
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 2.3e-15 87.0 175 38.9
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 1.1e-14 84.7 181 35.4
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 1.3e-13 81.3 186 37.1
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 3.7e-13 79.7 231 32.0
AUR62039440 Chenopodium quinoa HOM05D004353 ORTHO05D004989 8.2e-13 78.6 66 54.5
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 3.1e-12 76.6 232 33.6
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 6.9e-12 75.5 183 38.8
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 1.2e-11 74.7 49 75.5
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 3.4e-11 73.2 85 41.2
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 3.4e-11 73.2 177 38.4
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 4.5e-11 72.8 164 40.9
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 5.9e-11 72.4 74 45.9
BcaB02g08913 Brassica carinata HOM05D004353 ORTHO05D004989 7.6e-11 72.0 168 33.3
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 1.0e-10 71.6 155 37.4
Atru.chr4.262 Acer truncatum HOM05D004353 ORTHO05D004989 2.2e-10 70.5 100 60.0
BolC4t22093H Brassica oleracea HOM05D004353 ORTHO05D004989 1.1e-09 68.2 74 45.9
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 3.2e-09 66.6 155 41.9
BcaC02g12375 Brassica carinata HOM05D004353 ORTHO05D004989 1.6e-08 64.3 65 46.2
CARHR169980 Cardamine hirsuta HOM05D004353 ORTHO05D004989 4.6e-08 62.8 103 51.5
Glyma.15G137300 Glycine max HOM05D004353 ORTHO05D004989 1.5e-06 57.8 151 41.1


User provided reference genes

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