Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g04930 Coffea canephora HOM05D005915 ORTHO05D007239 1.4e-79 299.7 168 100.0
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 4.4e-28 128.6 177 52.0
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.4e-26 123.6 171 53.2
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 4.5e-25 118.6 168 54.2
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 5.9e-25 118.2 168 54.8
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 2.2e-24 116.3 163 55.2
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 2.2e-24 116.3 168 54.2
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 3.8e-24 115.5 168 54.2
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 3.2e-23 112.5 170 48.8
Migut.D01097 Erythranthe guttata HOM05D005915 ORTHO05D007239 6.1e-22 108.2 95 71.6
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 1.4e-21 107.1 167 51.5
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 5.2e-21 105.1 127 56.7
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 1.5e-20 103.6 181 46.4
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 4.4e-20 102.1 162 48.1
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 2.2e-19 99.8 117 54.7
GSVIVG01017559001 Vitis vinifera HOM05D005915 ORTHO05D007239 2.2e-19 99.8 163 49.7
unitig_736.g22803 Utricularia gibba HOM05D005915 ORTHO05D007239 2.8e-19 99.4 132 55.3
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 6.3e-19 98.2 93 66.7
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 6.3e-19 98.2 156 48.7
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 1.4e-18 97.1 163 45.4
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 4.1e-18 95.5 183 45.9
arahy.Tifrunner.gnm1.ann1.2L8LZM Arachis hypogaea HOM05D005915 ORTHO05D007239 5.4e-18 95.1 129 50.4
Oeu008050.2 Olea europaea HOM05D005915 ORTHO05D007239 7.0e-18 94.7 140 48.6
Lsat_1_v5_gn_4_85741 Lactuca sativa HOM05D005915 ORTHO05D007239 9.2e-18 94.4 86 67.4
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 1.6e-17 93.6 139 48.9
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 2.7e-17 92.8 212 40.1
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 2.7e-17 92.8 136 50.0
EL10As5g23598 Beta vulgaris HOM05D005915 ORTHO05D007239 4.5e-17 92.0 146 46.6
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 4.5e-17 92.0 124 50.8
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 5.9e-17 91.7 130 49.2
CSS0040460 Camellia sinensis var. sinensis HOM05D005915 ORTHO05D007239 7.7e-17 91.3 145 46.2
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 1.0e-16 90.9 116 53.4
ECA232G2243 Erigeron canadensis HOM05D005915 ORTHO05D007239 1.3e-16 90.5 132 50.8
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 1.3e-16 90.5 165 44.2
arahy.Tifrunner.gnm1.ann1.DN9Y4W Arachis hypogaea HOM05D005915 ORTHO05D007239 1.7e-16 90.1 167 42.5
HanXRQChr04g0107231 Helianthus annuus HOM05D005915 ORTHO05D007239 3.8e-16 89.0 86 65.1
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 8.6e-16 87.8 149 42.3
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 1.1e-15 87.4 174 42.5
Ah.05g171200 Amaranthus hybridus HOM05D005915 ORTHO05D007239 1.5e-15 87.0 96 59.4
PSO063G1890 Papaver somniferum HOM05D005915 ORTHO05D007239 1.5e-15 87.0 95 61.1
Prupe.1G199000 Prunus persica HOM05D005915 ORTHO05D007239 1.5e-15 87.0 128 50.0
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 1.9e-15 86.7 91 58.2
Cpa.g.sc0.147 Carica papaya HOM05D005915 ORTHO05D007239 2.5e-15 86.3 112 58.9
Sc12g0008470 Simmondsia chinensis HOM05D005915 ORTHO05D007239 9.5e-15 84.3 146 43.2
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 1.6e-14 83.6 178 42.1
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 2.8e-14 82.8 164 42.1
Nitab4.5_0004330g0010 Nicotiana tabacum HOM05D005915 ORTHO05D007239 3.6e-14 82.4 92 57.6
RcHm_v2.0_Chr7g0221831 Rosa chinensis HOM05D005915 ORTHO05D007239 3.6e-14 82.4 175 39.4
Lj3g0003301 Lotus japonicus HOM05D005915 ORTHO05D007239 4.7e-14 82.0 170 38.8
Glyma.08G216900 Glycine max HOM05D005915 ORTHO05D007239 6.1e-14 81.6 130 46.2
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 8.0e-14 81.3 123 48.8
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 8.0e-14 81.3 139 46.0
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 1.4e-13 80.5 151 45.0
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 1.4e-13 80.5 156 43.6
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 1.8e-13 80.1 136 47.1
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 3.0e-13 79.3 159 43.4
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 4.0e-13 79.0 137 46.7
FvH4_5g29190 Fragaria vesca HOM05D005915 ORTHO05D007239 4.0e-13 79.0 155 44.5
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 5.2e-13 78.6 155 41.3
Medtr8g060830 Medicago truncatula HOM05D005915 ORTHO05D007239 5.2e-13 78.6 121 46.3
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 8.9e-13 77.8 176 38.1
CDE05G3202 Ceratophyllum demersum HOM05D005915 ORTHO05D007239 8.9e-13 77.8 87 57.5
PSO782G5373 Papaver somniferum HOM05D005915 ORTHO05D007239 1.5e-12 77.0 168 41.7
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 2.0e-12 76.6 181 40.3
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 2.0e-12 76.6 160 42.5
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 3.4e-12 75.9 111 51.4
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 3.4e-12 75.9 111 51.4
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 3.4e-12 75.9 124 46.0
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 3.4e-12 75.9 164 40.9
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 5.7e-12 75.1 154 44.8
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 7.5e-12 74.7 180 40.0
Medtr4g006550 Medicago truncatula HOM05D005915 ORTHO05D007239 7.5e-12 74.7 121 44.6
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 9.8e-12 74.3 119 47.9
SalBow6G5910 Salvia bowleyana HOM05D005915 ORTHO05D007239 9.8e-12 74.3 233 35.6
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 1.3e-11 73.9 110 47.3
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 1.3e-11 73.9 111 51.4
PSO339G3366 Papaver somniferum HOM05D005915 ORTHO05D007239 1.3e-11 73.9 95 55.8
Hund00452 Selenicereus undatus HOM05D005915 ORTHO05D007239 1.7e-11 73.6 161 39.8
ATR1120G130 Amborella trichopoda HOM05D005915 ORTHO05D007239 2.2e-11 73.2 94 52.1
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 2.2e-11 73.2 119 45.4
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 2.9e-11 72.8 113 45.1
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 2.9e-11 72.8 113 45.1
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 2.9e-11 72.8 178 39.9
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 2.9e-11 72.8 179 40.2
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 3.7e-11 72.4 119 44.5
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 3.7e-11 72.4 111 50.5
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 3.7e-11 72.4 119 44.5
AUR62027568 Chenopodium quinoa HOM05D005915 ORTHO05D007239 3.7e-11 72.4 99 49.5
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 6.4e-11 71.6 111 46.8
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 6.4e-11 71.6 176 40.3
BolC3t13327H Brassica oleracea HOM05D005915 ORTHO05D007239 1.4e-10 70.5 100 49.0
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 1.4e-10 70.5 102 49.0
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 3.2e-10 69.3 110 44.5
AUR62022762 Chenopodium quinoa HOM05D005915 ORTHO05D007239 4.1e-10 68.9 158 39.2
Dinv21397 Davidia involucrata HOM05D005915 ORTHO05D007239 4.1e-10 68.9 111 46.8
SEGI_14387 Sequoiadendron giganteum HOM05D005915 ORTHO05D007239 5.4e-10 68.6 160 38.8
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 5.4e-10 68.6 41 82.9
Os08g0278100 Oryza sativa ssp. japonica HOM05D005915 ORTHO05D007239 7.0e-10 68.2 91 52.7
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 1.2e-09 67.4 142 40.8
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 1.2e-09 67.4 102 45.1
DCAR_016295 Daucus carota HOM05D005915 ORTHO05D007239 1.6e-09 67.0 135 48.9
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 2.0e-09 66.6 111 43.2
Zm00001eb174980 Zea mays HOM05D005915 ORTHO05D007239 1.0e-08 64.3 140 40.7
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 1.7e-08 63.5 121 39.7
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 1.7e-08 63.5 148 37.2
Peaxi162Scf00332g00322 Petunia axillaris HOM05D005915 ORTHO05D007239 2.3e-08 63.2 132 43.9
QL05p035112 Quercus lobata HOM05D005915 ORTHO05D007239 3.9e-08 62.4 37 78.4
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 8.6e-08 61.2 122 42.6
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 1.5e-07 60.5 38 78.9
Ah.05g171290 Amaranthus hybridus HOM05D005915 ORTHO05D007239 1.9e-07 60.1 102 45.1
FAN08G0623 Fragaria x ananassa HOM05D005915 ORTHO05D007239 9.5e-07 57.8 142 40.8
FAN18G1559 Fragaria x ananassa HOM05D005915 ORTHO05D007239 2.1e-06 56.6 95 47.4


User provided reference genes

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