Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g04860 Coffea canephora HOM05D007028 ORTHO05D003658 1.8e-119 432.6 211 100.0
Peaxi162Scf00332g00034 Petunia axillaris HOM05D007028 ORTHO05D003658 7.6e-46 188.0 218 49.5
PGSC0003DMG402014197 Solanum tuberosum HOM05D007028 ORTHO05D003658 6.5e-45 184.9 220 46.8
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 4.2e-44 182.2 220 46.8
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 4.2e-44 182.2 226 45.6
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 1.1e-41 174.1 220 45.9
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 2.5e-41 172.9 209 46.4
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 5.7e-41 171.8 234 44.0
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 7.4e-41 171.4 217 44.2
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 8.2e-40 167.9 223 44.4
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 2.4e-39 166.4 223 43.9
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 6.9e-39 164.9 223 43.9
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 1.5e-38 163.7 221 45.2
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 4.5e-38 162.2 223 42.6
Gohir.A05G120800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 8.5e-37 157.9 238 43.3
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 1.1e-36 157.5 222 45.0
Gorai.009G125300 Gossypium raimondii HOM05D007028 ORTHO05D003658 1.1e-36 157.5 238 42.9
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 7.2e-36 154.8 215 43.7
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 9.4e-36 154.5 209 42.1
Gohir.D05G121800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 3.6e-35 152.5 238 42.0
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 1.0e-34 151.0 180 45.6
Cpa.g.sc10.116 Carica papaya HOM05D007028 ORTHO05D003658 5.1e-34 148.7 212 44.3
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 5.1e-34 148.7 220 45.0
Nitab4.5_0001454g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 6.7e-34 148.3 222 41.4
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 1.1e-33 147.5 225 39.6
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 1.1e-33 147.5 221 40.7
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 1.1e-33 147.5 227 41.9
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 2.0e-33 146.7 180 49.4
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 4.8e-32 142.1 235 40.0
TPR.G19149 Trifolium pratense HOM05D007028 ORTHO05D003658 4.8e-32 142.1 234 41.5
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 6.3e-32 141.7 234 42.3
Ca_01026_v3 Cicer arietinum L. HOM05D007028 ORTHO05D003658 1.4e-31 140.6 228 42.1
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 1.8e-31 140.2 209 41.6
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 1.5e-30 137.1 241 39.4
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 2.0e-30 136.7 221 40.3
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 4.5e-30 135.6 214 42.5
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 7.7e-30 134.8 208 44.2
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 8.5e-29 131.3 226 37.6
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 1.1e-28 131.0 214 37.9
Lj3g0003871 Lotus japonicus HOM05D007028 ORTHO05D003658 1.0e-26 124.4 223 39.5
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 3.9e-26 122.5 209 37.8
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 2.0e-25 120.2 211 38.4
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 4.8e-24 115.5 77 71.4
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.2e-22 110.9 220 37.7
Potri.001G048400 Populus trichocarpa HOM05D007028 ORTHO05D003658 5.0e-21 105.5 208 37.5
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 2.5e-20 103.2 221 34.4
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 3.0e-18 96.3 73 58.9
Glyma.19G251200 Glycine max HOM05D007028 ORTHO05D003658 6.7e-18 95.1 86 48.8
Actinidia18232 Actinidia chinensis HOM05D007028 ORTHO05D003658 2.0e-17 93.6 60 63.3
Os06g0568400 Oryza sativa ssp. japonica HOM05D007028 ORTHO05D003658 1.7e-16 90.5 221 33.9
Glyma.03G253700 Glycine max HOM05D007028 ORTHO05D003658 4.8e-16 89.0 66 54.5
Lj2C51T14 Lonicera japonica HOM05D007028 ORTHO05D003658 1.1e-15 87.8 67 56.7
ATR0215G020 Amborella trichopoda HOM05D007028 ORTHO05D003658 1.4e-15 87.4 67 53.7
arahy.Tifrunner.gnm1.ann1.W3CHFV Arachis hypogaea HOM05D007028 ORTHO05D003658 1.8e-15 87.0 128 36.7
ATR0215G032 Amborella trichopoda HOM05D007028 ORTHO05D003658 2.4e-15 86.7 67 55.2
Ciclev10013422m.g Citrus clementina HOM05D007028 ORTHO05D003658 2.4e-15 86.7 67 58.2
Manes.08G105400 Manihot esculenta HOM05D007028 ORTHO05D003658 2.4e-15 86.7 67 52.2
arahy.Tifrunner.gnm1.ann1.RXM0S4 Arachis hypogaea HOM05D007028 ORTHO05D003658 4.1e-15 85.9 67 49.3
Dinv19203 Davidia involucrata HOM05D007028 ORTHO05D003658 4.1e-15 85.9 84 47.6
Manes.09G183300 Manihot esculenta HOM05D007028 ORTHO05D003658 5.3e-15 85.5 67 53.7
Hma1.2p1_0226F.1_g095710 Hydrangea macrophylla HOM05D007028 ORTHO05D003658 7.0e-15 85.1 169 34.3
VMungo1383G2132 Vigna mungo HOM05D007028 ORTHO05D003658 9.1e-15 84.7 100 39.0
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 1.6e-14 84.0 67 53.7
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 1.6e-14 84.0 67 53.7
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 2.0e-14 83.6 112 41.1
Cfa002571 Carpinus fangiana HOM05D007028 ORTHO05D003658 3.5e-14 82.8 117 36.8
Solyc09g061240.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 3.5e-14 82.8 80 47.5
Sopen09g023970 Solanum pennellii HOM05D007028 ORTHO05D003658 3.5e-14 82.8 80 47.5
PGSC0003DMG400046108 Solanum tuberosum HOM05D007028 ORTHO05D003658 3.5e-14 82.8 80 47.5
Actinidia23722 Actinidia chinensis HOM05D007814 ORTHO05D009902 7.7e-14 81.6 67 53.7
Cpa.g.sc8.155 Carica papaya HOM05D007028 ORTHO05D003658 1.0e-13 81.3 67 50.7
Glyma.03G080500 Glycine max HOM05D007028 ORTHO05D003658 1.0e-13 81.3 67 52.2
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 1.0e-13 81.3 67 50.7
DCAR_005532 Daucus carota HOM05D007028 ORTHO05D003658 1.3e-13 80.9 68 51.5
TAR633G1987 Trochodendron aralioides HOM05D007028 ORTHO05D003658 1.3e-13 80.9 67 52.2
Lj1g0008030 Lotus japonicus HOM05D007028 ORTHO05D003658 1.7e-13 80.5 91 45.1
Cc01_g17020 Coffea canephora HOM05D007028 ORTHO05D003658 2.9e-13 79.7 101 40.6
COL.COLO4_04560 Corchorus olitorius HOM05D007028 ORTHO05D003658 2.9e-13 79.7 67 50.7
Sed0022017 Sechium edule HOM05D007028 ORTHO05D003658 2.9e-13 79.7 67 44.8
Lsat_1_v5_gn_9_12301 Lactuca sativa HOM05D007028 ORTHO05D003658 3.8e-13 79.3 90 43.3
Eucgr.H01353 Eucalyptus grandis HOM05D007028 ORTHO05D003658 5.0e-13 79.0 67 52.2
Ciclev10023784m.g Citrus clementina HOM05D007028 ORTHO05D003658 6.5e-13 78.6 91 41.8
Migut.N00615 Erythranthe guttata HOM05D007028 ORTHO05D003658 6.5e-13 78.6 83 42.2
Psat5g168520 Pisum sativum HOM05D007028 ORTHO05D003658 6.5e-13 78.6 67 47.8
CsaV3_7G025940 Cucumis sativus L. HOM05D007028 ORTHO05D003658 8.5e-13 78.2 67 46.3
Sabra01G0033500 Salix brachista HOM05D007028 ORTHO05D003658 8.5e-13 78.2 211 29.9
Medtr7g057900 Medicago truncatula HOM05D007028 ORTHO05D003658 1.1e-12 77.8 67 47.8
MELO3C021015.2 Cucumis melo HOM05D007028 ORTHO05D003658 1.5e-12 77.4 67 46.3
TPR.G23292 Trifolium pratense HOM05D007028 ORTHO05D003658 1.9e-12 77.0 67 49.3
Gohir.A11G138300 Gossypium hirsutum HOM05D007028 ORTHO05D003658 2.5e-12 76.6 67 50.7
Gorai.007G154400 Gossypium raimondii HOM05D007028 ORTHO05D003658 2.5e-12 76.6 67 50.7
Nitab4.5_0000045g0190 Nicotiana tabacum HOM05D007028 ORTHO05D003658 3.2e-12 76.3 67 50.7
Actinidia37594 Actinidia chinensis HOM05D007028 ORTHO05D003658 4.2e-12 75.9 59 54.2
Lsat_1_v5_gn_2_16281 Lactuca sativa HOM05D007028 ORTHO05D003658 4.2e-12 75.9 67 49.3
ClCG09G009040 Citrullus lanatus HOM05D007028 ORTHO05D003658 5.5e-12 75.5 67 41.8
Lsat_1_v5_gn_8_3220 Lactuca sativa HOM05D007028 ORTHO05D003658 5.5e-12 75.5 67 47.8
Gohir.D11G144200 Gossypium hirsutum HOM05D007028 ORTHO05D003658 7.2e-12 75.1 67 49.3
Nitab4.5_0003312g0020 Nicotiana tabacum HOM05D007028 ORTHO05D003658 9.4e-12 74.7 67 47.8
QL09p054524 Quercus lobata HOM05D007028 ORTHO05D003658 9.4e-12 74.7 67 49.3
Oeu010092.1 Olea europaea HOM05D007028 ORTHO05D003658 1.2e-11 74.3 178 36.0
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 1.2e-11 74.3 103 37.9
Thecc.01G225600 Theobroma cacao HOM05D007028 ORTHO05D003658 1.2e-11 74.3 83 42.2
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 2.7e-11 73.2 86 41.9
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 4.7e-11 72.4 69 47.8
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 6.1e-11 72.0 210 31.9
Potri.002G242400 Populus trichocarpa HOM05D007028 ORTHO05D003658 6.1e-11 72.0 67 43.3
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 1.4e-10 70.9 96 42.7
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 1.4e-10 70.9 95 40.0
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.8e-10 70.5 140 33.6
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 2.3e-10 70.1 90 35.6
FvH4_2g19050 Fragaria vesca HOM05D007028 ORTHO05D003658 2.3e-10 70.1 118 34.7
FAN27G2710 Fragaria x ananassa HOM05D007028 ORTHO05D003658 2.3e-10 70.1 118 33.9
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 3.0e-10 69.7 69 44.9
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 4.0e-10 69.3 69 47.8
MD05G1175300 Malus domestica HOM05D007028 ORTHO05D003658 4.0e-10 69.3 160 28.1
FAN15G3354 Fragaria x ananassa HOM05D007028 ORTHO05D003658 5.2e-10 68.9 67 43.3
ECA246G0661 Erigeron canadensis HOM05D007028 ORTHO05D003658 6.8e-10 68.6 165 35.8
FAN24G0765 Fragaria x ananassa HOM05D007028 ORTHO05D003658 6.8e-10 68.6 118 33.9
MD10G1164400 Malus domestica HOM05D007028 ORTHO05D003658 6.8e-10 68.6 67 40.3
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 6.8e-10 68.6 69 46.4
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 6.8e-10 68.6 69 46.4
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 6.8e-10 68.6 68 42.6
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 8.8e-10 68.2 212 28.3
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 8.8e-10 68.2 76 42.1
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 8.8e-10 68.2 71 42.3
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 1.2e-09 67.8 69 44.9
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 1.2e-09 67.8 92 40.2
ECA238G1648 Erigeron canadensis HOM05D007028 ORTHO05D003658 2.0e-09 67.0 67 47.8
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 2.0e-09 67.0 103 32.0
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 2.6e-09 66.6 70 40.0
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 2.6e-09 66.6 71 43.7
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 2.6e-09 66.6 69 46.4
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 3.4e-09 66.2 69 46.4
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 3.4e-09 66.2 74 41.9
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 3.4e-09 66.2 69 46.4
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 4.4e-09 65.9 100 37.0
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 4.4e-09 65.9 77 40.3
Haze_24802 Corylus avellana HOM05D007028 ORTHO05D003658 4.4e-09 65.9 53 52.8
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 4.4e-09 65.9 213 28.6
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 4.4e-09 65.9 76 43.4
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 4.4e-09 65.9 69 46.4
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 5.7e-09 65.5 85 38.8
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 5.7e-09 65.5 71 39.4
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 7.5e-09 65.1 69 40.6
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 9.8e-09 64.7 70 38.6
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.3e-08 64.3 69 49.3
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.3e-08 64.3 69 49.3
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 1.7e-08 63.9 69 40.6
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 1.7e-08 63.9 68 50.0
Manes.12G044800 Manihot esculenta HOM05D007028 ORTHO05D003658 1.7e-08 63.9 67 44.8
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 2.2e-08 63.5 120 35.0
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 2.2e-08 63.5 70 38.6
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 2.2e-08 63.5 74 37.8
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 2.2e-08 63.5 85 35.3
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 2.8e-08 63.2 69 40.6
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 4.8e-08 62.4 70 40.0
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 4.8e-08 62.4 74 39.2
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.8e-08 62.4 69 42.0
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 4.8e-08 62.4 71 39.4
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 4.8e-08 62.4 76 39.5
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 6.3e-08 62.0 68 41.2
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 6.3e-08 62.0 69 40.6
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 6.3e-08 62.0 69 39.1
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 6.3e-08 62.0 69 42.0
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 6.3e-08 62.0 74 37.8
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 6.3e-08 62.0 69 43.5
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 8.3e-08 61.6 69 36.2
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 8.3e-08 61.6 69 39.1
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 1.1e-07 61.2 69 42.0
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 1.1e-07 61.2 84 36.9
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 1.4e-07 60.8 67 41.8
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 1.4e-07 60.8 69 42.0
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 1.4e-07 60.8 69 43.5
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 3.1e-07 59.7 69 39.1
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.1e-07 59.3 69 40.6
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 5.4e-07 58.9 69 40.6
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 5.4e-07 58.9 88 35.2
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 5.4e-07 58.9 88 35.2
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 7.0e-07 58.5 61 41.0
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 7.0e-07 58.5 69 44.9
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 9.1e-07 58.2 69 36.2
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 1.2e-06 57.8 88 35.2
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 2.0e-06 57.0 69 36.2
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 2.7e-06 56.6 69 39.1


User provided reference genes

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