Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 2.3e-154 548.9 279 100.0
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 3.8e-77 292.4 260 61.2
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 7.9e-75 284.6 264 58.7
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 2.6e-73 279.6 264 58.7
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 4.4e-73 278.9 264 58.0
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 5.7e-73 278.5 264 58.0
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 9.7e-73 277.7 269 57.2
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.2e-72 276.6 265 58.1
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.1e-71 274.2 262 59.2
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 1.4e-71 273.9 264 56.8
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 1.8e-71 273.5 262 56.1
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 1.8e-71 273.5 268 57.8
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 2.4e-71 273.1 264 57.2
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 4.1e-71 272.3 262 56.9
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 1.5e-70 270.4 268 57.5
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 1.5e-70 270.4 263 57.4
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 2.0e-70 270.0 266 55.3
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 4.5e-70 268.9 266 57.5
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 4.5e-70 268.9 242 60.3
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 7.7e-70 268.1 310 51.0
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 1.0e-69 267.7 266 57.5
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 2.2e-69 266.5 260 58.5
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 3.8e-69 265.8 261 54.8
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.1e-68 264.2 317 49.8
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 3.2e-68 262.7 273 56.4
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 1.6e-67 260.4 260 56.2
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 1.6e-67 260.4 257 57.2
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 2.7e-67 259.6 236 57.6
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 3.6e-67 259.2 299 50.5
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 4.7e-67 258.8 254 56.3
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.0e-66 257.7 257 56.8
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 3.0e-66 256.1 231 58.9
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 3.9e-66 255.8 252 59.1
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 3.9e-66 255.8 236 57.2
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 5.2e-66 255.4 255 56.5
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 2.6e-65 253.1 235 57.9
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 3.3e-65 252.7 262 54.6
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 5.7e-65 251.9 235 57.0
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 5.7e-65 251.9 269 54.6
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 9.7e-65 251.1 235 57.0
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 9.7e-65 251.1 233 57.1
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.3e-64 250.8 233 57.1
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.3e-64 250.8 258 52.7
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 1.7e-64 250.4 231 58.0
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 1.7e-64 250.4 233 62.2
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.8e-64 249.6 259 57.9
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 2.8e-64 249.6 259 57.9
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 3.7e-64 249.2 230 57.8
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 3.7e-64 249.2 289 53.6
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 4.8e-64 248.8 234 57.7
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 6.3e-64 248.4 229 59.4
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 6.3e-64 248.4 230 57.8
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 6.3e-64 248.4 233 56.7
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 6.3e-64 248.4 244 59.4
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 8.2e-64 248.1 263 55.9
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 8.2e-64 248.1 235 59.1
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 8.2e-64 248.1 244 59.4
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 1.1e-63 247.7 255 56.9
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 1.1e-63 247.7 263 54.0
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.4e-63 247.3 244 59.4
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 1.8e-63 246.9 233 57.5
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 1.8e-63 246.9 235 59.6
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 2.4e-63 246.5 235 59.1
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 2.4e-63 246.5 237 56.5
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.4e-63 246.5 244 59.4
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 5.3e-63 245.4 232 57.8
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 5.3e-63 245.4 235 58.7
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 5.3e-63 245.4 282 51.8
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 7.0e-63 245.0 260 54.6
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 9.1e-63 244.6 234 57.7
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.6e-62 243.8 267 51.7
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 1.6e-62 243.8 242 55.8
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.6e-62 243.8 257 52.9
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.6e-62 243.8 234 56.0
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.6e-62 243.8 257 54.1
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.6e-62 243.8 272 55.5
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 3.5e-62 242.7 232 59.9
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 3.5e-62 242.7 241 58.1
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 3.5e-62 242.7 257 55.6
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 2.2e-61 240.0 267 50.9
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 2.9e-61 239.6 241 55.6
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 3.8e-61 239.2 241 55.6
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 5.0e-61 238.8 235 56.2
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 5.0e-61 238.8 262 54.2
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 1.1e-60 237.7 219 58.9
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 1.9e-60 236.9 195 64.1
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 3.2e-60 236.1 266 50.4
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 4.2e-60 235.7 254 53.5
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 5.5e-60 235.3 272 51.5
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 9.4e-60 234.6 230 60.4
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.2e-59 234.2 220 60.9
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 1.6e-59 233.8 268 53.7
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 2.7e-59 233.0 236 56.8
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 3.6e-59 232.6 249 54.2
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 4.7e-59 232.3 236 56.8
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 4.7e-59 232.3 242 54.5
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 1.4e-58 230.7 334 43.1
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.8e-58 230.3 230 55.2
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.8e-58 230.3 282 51.1
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 1.8e-58 230.3 209 61.7
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 2.3e-58 229.9 262 52.7
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 2.3e-58 229.9 277 49.5
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.5e-57 227.3 236 55.9
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.6e-57 226.5 246 55.3
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 3.3e-57 226.1 262 50.8
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 5.7e-57 225.3 214 60.7
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 7.5e-57 224.9 271 50.9
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.2e-56 223.4 281 50.2
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 4.8e-56 222.2 264 49.6
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 4.8e-56 222.2 249 53.8
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 8.2e-56 221.5 266 50.0
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 8.2e-56 221.5 298 50.3
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 1.1e-55 221.1 266 50.8
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 2.4e-55 219.9 259 50.2
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 2.2e-53 213.4 213 57.7
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 2.9e-53 213.0 280 46.4
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 4.7e-51 205.7 275 47.3
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 2.3e-50 203.4 431 35.3
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 8.8e-50 201.4 126 78.6
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 9.8e-49 198.0 270 45.6
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.3e-48 197.6 248 49.2
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 1.7e-48 197.2 233 51.9
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 4.8e-48 195.7 278 46.0
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 1.1e-47 194.5 135 72.6
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 4.5e-46 189.1 301 42.9
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 4.5e-46 189.1 301 42.9
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 2.3e-45 186.8 221 51.1
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.3e-45 186.8 134 73.1
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.3e-45 186.8 134 73.1
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 3.2e-44 183.0 217 51.2
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 5.2e-42 175.6 111 79.3
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 4.9e-40 169.1 98 82.7
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.5e-38 162.5 200 46.5
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 2.3e-37 160.2 219 44.3
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 3.3e-36 156.4 123 70.7
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.4e-34 151.0 93 79.6
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 2.7e-30 136.7 171 43.3
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 6.6e-29 132.1 72 88.9
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 1.1e-28 131.3 129 53.5
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 7.3e-28 128.6 171 46.2
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 1.1e-26 124.8 200 42.0
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.6e-22 110.9 117 53.8
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 5.0e-21 105.9 62 83.9
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 7.3e-20 102.1 62 79.0
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 1.1e-15 88.2 62 71.0
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 3.2e-15 86.7 119 43.7
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.1e-15 86.3 57 73.7
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 7.1e-15 85.5 92 53.3
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 7.1e-15 85.5 109 46.8
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 1.6e-14 84.3 117 45.3
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 3.5e-14 83.2 88 52.3
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 5.2e-10 69.3 120 41.7
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 6.8e-10 68.9 108 39.8
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 7.6e-09 65.5 34 88.2
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 2.2e-08 63.9 73 49.3
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 3.8e-08 63.2 76 46.1
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.9e-07 60.8 67 52.2
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 5.4e-07 59.3 41 65.9
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.2e-06 58.2 83 44.6
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 1.6e-06 57.8 46 63.0
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 2.7e-06 57.0 106 32.1
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 6.0e-06 55.8 83 41.0
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 7.8e-06 55.5 130 35.4


User provided reference genes

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